PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG034574t1

Common Name

TCM_034574

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 332aa MW: 37811.6 Da PI: 4.4461

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034574t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	7.1e-12	165	208	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L Thecc1EG034574t1 165 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 208 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.491	159	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-16	163	227	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.2E-12	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-9	165	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.73E-5	166	213	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.2E-15	166	226	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	7.58E-4	257	298	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MEFNEQSFLE ELLALRRDSW DTIPTEMNEI FSSGWNFDCF DENPASFLPN SFCQEFSVPF 60 QQDFNYNFNE VHCPFGDEFS APQVTDSSNN TFDTPPFPVQ EDYSLNMVEE GESGFLADEL 120 HKLDVQAACK AEPIQSPEEP VFNMGTCIDR KNRAKKLAGQ PSKNLMAERR RRKRLNDRLS 180 MLRSIVPKIS KMDRTSILGD TIDYMKELLE RIKSLQQEIE AGSNELNVAH IFKDVKPNEI 240 LVRNTPKFEV ERRNVDTRIE ICCTGKPGLM LSTVTTLESL GLEIQQCVIS CFNDFAMQAS 300 CSEDLEQRTL LSSEDIKQAL FRNAGYGGRC L*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	174	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007018333.2	0.0	PREDICTED: transcription factor bHLH93
Swissprot	Q9LSL1	4e-84	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A061FF70	0.0	A0A061FF70_THECC; Beta HLH protein 93
STRING	EOY15558	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2043	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	4e-86	beta HLH protein 93

Link Out ? help Back to Top
Phytozome	Thecc1EG034574t1
Entrez Gene	18591864

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]