PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034531t6
Common NameTCM_034531
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 253aa    MW: 27552.8 Da    PI: 6.3644
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034531t6genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.31.4e-15210243132
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                       C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ 
  Thecc1EG034531t6 210 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWAN 243
                       *******99***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132012.94270105IPR010399Tify domain
SMARTSM009794.2E-770105IPR010399Tify domain
PfamPF062002.2E-1073104IPR010399Tify domain
PROSITE profilePS5101712.65138180IPR010402CCT domain
PfamPF062036.0E-15138179IPR010402CCT domain
SMARTSM004012.6E-5204251IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.09E-9205244No hitNo description
Gene3DG3DSA:3.30.50.101.6E-12208244IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.53E-12209244No hitNo description
PROSITE patternPS003440210237IPR000679Zinc finger, GATA-type
PfamPF003202.4E-13210244IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAAANPQPLQ ARLFEEHAQG TIQIEDDDGE YEDDAMDDVE DANVNSVNVA EHGIGVVGGV  60
SGGGGGGVVM ASRTSELTLS FEGEVYVFPA VTPEKVQAVL LLLGGRDIPT GVPTIEVPFD  120
QNNRGVGDLP KRSNLSRRIA SLVRFREKRK ERCFDKKIRY TVRKEVAQRM HRKNGQFASL  180
KESTSTSSWD SSQTGVQDGT PHPETVVRRC QHCGVSENNT PAMRRGPAGP RTLCNACGLM  240
WANKVWDTER SQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP3263080.0KP326308.1 Gossypium barbadense JAZ18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981189.10.0PREDICTED: GATA transcription factor 24 isoform X2
SwissprotQ8GXL72e-64GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A061FEJ90.0A0A061FEJ9_THECC; ZIM-like 1 isoform 6
STRINGEOY154860.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-62ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]