PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG034531t1 | ||||||||
Common Name | TCM_034531 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | GATA | ||||||||
Protein Properties | Length: 356aa MW: 38465.3 Da PI: 4.4384 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.7 | 4.9e-16 | 210 | 246 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ Thecc1EG034531t1 210 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 246 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.942 | 70 | 105 | IPR010399 | Tify domain |
SMART | SM00979 | 4.2E-7 | 70 | 105 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.5E-10 | 73 | 104 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 12.65 | 138 | 180 | IPR010402 | CCT domain |
Pfam | PF06203 | 9.9E-15 | 138 | 179 | IPR010402 | CCT domain |
PROSITE profile | PS50114 | 8.616 | 204 | 260 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 7.7E-11 | 204 | 257 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.66E-11 | 205 | 257 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.0E-14 | 208 | 251 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.93E-16 | 209 | 259 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 210 | 237 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 6.9E-14 | 210 | 246 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MAAANPQPLQ ARLFEEHAQG TIQIEDDDGE YEDDAMDDVE DANVNSVNVA EHGIGVVGGV 60 SGGGGGGVVM ASRTSELTLS FEGEVYVFPA VTPEKVQAVL LLLGGRDIPT GVPTIEVPFD 120 QNNRGVGDLP KRSNLSRRIA SLVRFREKRK ERCFDKKIRY TVRKEVAQRM HRKNGQFASL 180 KESTSTSSWD SSQTGVQDGT PHPETVVRRC QHCGVSENNT PAMRRGPAGP RTLCNACGLM 240 WANKGTLRDL SKGGRNISMD QTEPETPIDV KPSIMEGDFP GNQDEHGNPS KDVTDGSNNA 300 SINPDEEDLH ESAEDLTNSL SMGIVHPSAD DDEQEPLVEL ANPSDTEISI PSNFD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP326308 | 0.0 | KP326308.1 Gossypium barbadense JAZ18 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007018264.1 | 0.0 | PREDICTED: GATA transcription factor 24 isoform X4 | ||||
Swissprot | Q8GXL7 | 1e-69 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A061FDS2 | 0.0 | A0A061FDS2_THECC; ZIM-like 1 isoform 1 | ||||
STRING | EOY15486 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.2 | 5e-68 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG034531t1 |
Entrez Gene | 18591826 |
Publications ? help Back to Top | |||
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