PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034530t1
Common NameTCM_034530
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GATA
Protein Properties Length: 300aa    MW: 32107.3 Da    PI: 6.0313
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034530t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.51.4e-16210246135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ kg+
  Thecc1EG034530t1 210 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANKGT 246
                       *****99999************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009799.0E-975110IPR010399Tify domain
PROSITE profilePS5132012.92375110IPR010399Tify domain
PfamPF062003.3E-1078109IPR010399Tify domain
PfamPF062033.7E-16142184IPR010402CCT domain
PROSITE profilePS5101712.61142184IPR010402CCT domain
SMARTSM004011.9E-16204257IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.04204261IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-12207256No hitNo description
Gene3DG3DSA:3.30.50.101.1E-15208250IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.14E-15209256No hitNo description
PROSITE patternPS003440210237IPR000679Zinc finger, GATA-type
PfamPF003201.8E-14210246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MYGQSQPMNI PAQIVGSGAD VDDDVSASVS ADNHHSVSYD AHPLEDGVGV EDVANDPIYV  60
SAAVASASDL AAVQRVDGAS QLTLSFRGQV YVFDAITPDK FHAVLLLLGG CELASGPHGV  120
EMSSQNQRGV LDFPSRSNQP HRAASLDRFR QKRKERCFDK KVRYSVRQEV ALRMQRNKGQ  180
FTSSKKSDGA YSWGTSQDSG QDDNLPDTSC THCGISSKST PMMRRGPSGP RSLCNACGLF  240
WANKGTLRDI PKKTQDHSQT PVEQGESEAN DSDCGNAIPT QSNVVSFSNG DASALIAEH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018259.20.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH61e-93GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A061FLV30.0A0A061FLV3_THECC; GATA-type zinc finger protein with TIFY domain
STRINGEOY154840.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50062543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.27e-94GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]