PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG034475t2

Common Name

TCM_034475

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 361aa MW: 39420.6 Da PI: 4.603

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034475t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.1	0.00073	308	348	9	54
HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 r R ++i++ + Lr+++P +K + + +L +A++Y+ksL Thecc1EG034475t2 308 KRMRKEKIRETVSALRSIIPGgE-----GK-DAIVVLDEAIDYLKSL 348 589999************944.....44.5599********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.436	299	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.68E-7	307	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.8E-6	309	353	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.22E-4	309	349	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MGEGCGSWFP QQQFDWQSPN FNSLAAPHPL VQQNTNPRFI NPGTNMVSTA GALPVHANPG 60 LSHLRVGQVN EPHGWYYCLP HFRQVFAPAS NTELKEQLPA NPYEHHRENI VPKAGSGCAQ 120 KRFLVFDQSG DQTTMIFSSA FRTPIKCLTS WGPKSPGACN FNGEDPISKV NLNLQSGPIS 180 TDLFDDNGTD VQSEMHEDTE ELNALLYSDD DNDFIEDEEV TSTGHSPSTM TAHDEQFEGG 240 TEEVASSTGL TKKRKLIDRG NDYVPLLVDT ASSINPNRCS EYEDDADSGC AFGQNLGSGD 300 MDLSSCNKRM RKEKIRETVS ALRSIIPGGE GKDAIVVLDE AIDYLKSLKL KAKAFGLSTL 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MGEGCGSWFP QQQFDWQSPN FNSLAAPHPL VQQNTNPRFI NPGTNMVSTA GALPVHANPG  60
LSHLRVGQVN EPHGWYYCLP HFRQVFAPAS NTELKEQLPA NPYEHHRENI VPKAGSGCAQ  120
KRFLVFDQSG DQTTMIFSSA FRTPIKCLTS WGPKSPGACN FNGEDPISKV NLNLQSGPIS  180
TDLFDDNGTD VQSEMHEDTE ELNALLYSDD DNDFIEDEEV TSTGHSPSTM TAHDEQFEGG  240
TEEVASSTGL TKKRKLIDRG NDYVPLLVDT ASSINPNRCS EYEDDADSGC AFGQNLGSGD  300
MDLSSCNKRM RKEKIRETVS ALRSIIPGGE GKDAIVVLDE AIDYLKSLKL KAKAFGLSTL  360
*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007018176.2	0.0	PREDICTED: transcription factor bHLH145
TrEMBL	A0A061FEA8	0.0	A0A061FEA8_THECC; Transcription factor, putative isoform 2
STRING	EOY15400	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	7e-09	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Thecc1EG034475t2
Entrez Gene	18591779

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]