PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034439t1
Common NameTCM_034439
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 333aa    MW: 36959.6 Da    PI: 5.8032
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034439t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.88.1e-13134185155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Thecc1EG034439t1 134 QRMTHITVERNRRKQMNEYLAVLRSLMPPS---YVQRGDQASIIGGAINFVKELE 185
                       79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.36E-13132189No hitNo description
PROSITE profilePS5088815.142133184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-16133200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-10134185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-13134198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9139190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MALEAVVYPQ DPFTYACKDF YLVGGGAWGY DFCFQEEDKA LLGILDNNIE QGSSPHLHAN  60
WDSSSTSVMQ HAQEWDPYSS PEACTVDQSL PGGSFPPMEA PAAAAATATT TTTNSRRKRR  120
RTRSSKNKEE LENQRMTHIT VERNRRKQMN EYLAVLRSLM PPSYVQRGDQ ASIIGGAINF  180
VKELEQLLQS MEAHKRTTQQ PEHNGYSSPF AEFFTFPQFS THATQCNNPQ SMAAEPMAAA  240
ESVADIEVTM VETHANLKIL SKKRPRQLLK LVAGLQSLRL TILHLNVTTV EEMALYSISV  300
KVEEGCHLNT VDEIAAAVNQ MLRGIQEEAA FS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120RKRRR
2116121RKRRRT
3134145RMTHITVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007018123.20.0PREDICTED: transcription factor bHLH96
SwissprotQ9C7T41e-104BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A061FEL60.0A0A061FEL6_THECC; DNA binding protein, putative
STRINGEOY153480.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-96bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]