PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034392t2
Common NameTCM_034392
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 716aa    MW: 78828.9 Da    PI: 4.5019
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034392t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.6e-10562605146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       r +WT+++ el++ a++q+G++ +++I + ++ gR++ q+k+++ +
  Thecc1EG034392t2 562 RAKWTKQDTELFYGAIRQFGPD-FSLIQQLFP-GRSRHQIKLKFKN 605
                       569*****************88.*********.**********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.4E-26555637No hitNo description
PROSITE profilePS5129310.747560611IPR017884SANT domain
SMARTSM007176.7E-9561609IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-6562605IPR009057Homeodomain-like
SuperFamilySSF466893.36E-10564612IPR009057Homeodomain-like
CDDcd001673.85E-7564605No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MDDFDIFSDK SLVTQARAGA KFQPRAKLKS RKENVASIPC NKKEEVVTQS LSSLDNRLTS  60
PRGLSVDTST TSGTEESLKT NYEDLSQIAV NKADDVGFID APRSDIPVTV NDHDSHSVPN  120
IWAKDVDFDL DPFDDVANQV TNNGRAGGKF EPKTRPKACI VDPDGVVDDC GSSEVMTSSQ  180
VAVTDSLLSE VAVSNGCHDS HSSFGRSVGE NADIFSGLEC LDQFLTQSSN NNGGIQIDDE  240
GTGAQEAGAF PDVETQDIMS GATIASGAFI PPDPSTSEFP VNEELTNLTE ASNPGVTLSG  300
DFPSMPGKLS SNSRKREASP IPNPSQKSKQ SSASDGGNEN GKATKRLRKQ VTSPKLVDDH  360
EDGTCNDEGL ATEPPTSSAI DEDRDDGDDD DEYNAESAFS KRRTSRRSKK PMAENEKPPR  420
KRKTAKEKQV EKQKKVNEAS DQPTEEQPRK FSHSTRRKRR FVDESLLHTP EDEIDFAKVA  480
LKDIILLADY KERIAKKEAK ASKIPLTNQS TKNTFPEENA HNEESSIASE QDQGFTDDQM  540
SGGAQSSSFF LNYQSYMDKE PRAKWTKQDT ELFYGAIRQF GPDFSLIQQL FPGRSRHQIK  600
LKFKNEERRY PLRLSEALAS RTKDHSYFEK VIEQLQQVAG QAERESTGDV SMDLTREEAE  660
LTPEANGKAT KAEQDEDEAV GDQQADVAED RSTFKSDETD DDDHEDILSS YRSAF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1400422KRRTSRRSKKPMAENEKPPRKRK
2416422KPPRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981354.10.0PREDICTED: transcription factor TFIIIB component B'' isoform X5
TrEMBLA0A061FEY90.0A0A061FEY9_THECC; Homeodomain superfamily protein isoform 2
STRINGEOY152610.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.19e-44MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]