PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG034391t1

Common Name

TCM_034391

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Nin-like

Protein Properties

Length: 953aa MW: 105470 Da PI: 6.7991

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034391t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.8	1e-28	634	685	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l+++F++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Thecc1EG034391t1 634 AEKTITLQVLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 685 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.564	624	705	IPR003035	RWP-RK domain
Pfam	PF02042	2.6E-25	637	685	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.52E-22	854	941	No hit	No description
SMART	SM00666	3.9E-27	855	938	IPR000270	PB1 domain
PROSITE profile	PS51745	27.62	855	938	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	7.1E-22	856	935	No hit	No description
Pfam	PF00564	1.4E-19	857	937	IPR000270	PB1 domain
CDD	cd06407	8.86E-40	857	936	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 953 aa Download sequence Send to blast
MRSVFVAHVL VPASDYLLKT GIHPRSAILG GPSYSAMDFD YMDELFLDGC WLETAEGSEF 60 LTLSPSSSNA FFDPAFMWPT SESNTGDLGA GLSQIHNQGE NQRSLLPGNS HMNGTQAESL 120 VSPQFSHMAD VDKSHSPHGY CITEGSELSK RWWIGPRTSP GPATSVMQRL IQALDYIKDF 180 AKEKDVLVQL WVPVNRGGRR VLTTSEQPFS LDPNSQRLAS YRNISVKYQF PAEEDSKDAA 240 GLPGRVFLSK VPEWTPDVRF FRSDEYPRLG HAQQHDVRGT FALPVFEQGS RTCLGVIEVV 300 MTTEKIKIRP ELESVCKALE AVNLRSSIAS STQNVKACNK SYQAGLHEIK EVLRCACDTH 360 GLPLAQTWVS CIEQGKEGCR HSTDNYVHCV STVDDACHIG DPNILGFHEA CSEHHLLKGQ 420 GVAGRAFMTN QPCFSADITS FKRTEYPLAH HAMMFNLHAA VSIRLRCIHT GNADFVLEFF 480 LPTDCRDPEG QKKMLNSLSI IIQQVCCSLR VVTDKELDEE TDLALSEVIA PSDGIPSRDQ 540 LSKEQCTHRS QKRSSENSSW TASLTEVQQS TNAALGLGKE KPRAMLDEEL SELKQHHEQV 600 GLRESVECGD STFNEISFTS LAMGKTGEKR RTKAEKTITL QVLRQHFAGS LKDAAKSIGV 660 CPTTLKRICR QHGIKRWPSR KIKKVGHSLQ KLQNVIDSVQ GASGAFHISS FYSNFPELAS 720 PKLSGTSTLS TTRLNDQPKQ TSIQPEGDNF LPQAATSNSP SSSCSQSSSS SQCYSSGTHQ 780 PSKISGNEDL TIGESSGDCE LKRVRSDAEL HAVSKEGPKL FPRSQSLRSL NEQLISDSLQ 840 PISKNTSQIA QDLDAQRIKV TYGDEKIRLR MKNKWLFKDL LHEITRRFNI DDISRFDLKY 900 LDDDSEWVLL TCDADLKECI DVCQSSQGNT IKLSLQVSHH HLDRSSGSTG PL*

Sequence ? help Back to Top

Protein Sequence Length: 953 aa Download sequence Send to blast

MRSVFVAHVL VPASDYLLKT GIHPRSAILG GPSYSAMDFD YMDELFLDGC WLETAEGSEF  60
LTLSPSSSNA FFDPAFMWPT SESNTGDLGA GLSQIHNQGE NQRSLLPGNS HMNGTQAESL  120
VSPQFSHMAD VDKSHSPHGY CITEGSELSK RWWIGPRTSP GPATSVMQRL IQALDYIKDF  180
AKEKDVLVQL WVPVNRGGRR VLTTSEQPFS LDPNSQRLAS YRNISVKYQF PAEEDSKDAA  240
GLPGRVFLSK VPEWTPDVRF FRSDEYPRLG HAQQHDVRGT FALPVFEQGS RTCLGVIEVV  300
MTTEKIKIRP ELESVCKALE AVNLRSSIAS STQNVKACNK SYQAGLHEIK EVLRCACDTH  360
GLPLAQTWVS CIEQGKEGCR HSTDNYVHCV STVDDACHIG DPNILGFHEA CSEHHLLKGQ  420
GVAGRAFMTN QPCFSADITS FKRTEYPLAH HAMMFNLHAA VSIRLRCIHT GNADFVLEFF  480
LPTDCRDPEG QKKMLNSLSI IIQQVCCSLR VVTDKELDEE TDLALSEVIA PSDGIPSRDQ  540
LSKEQCTHRS QKRSSENSSW TASLTEVQQS TNAALGLGKE KPRAMLDEEL SELKQHHEQV  600
GLRESVECGD STFNEISFTS LAMGKTGEKR RTKAEKTITL QVLRQHFAGS LKDAAKSIGV  660
CPTTLKRICR QHGIKRWPSR KIKKVGHSLQ KLQNVIDSVQ GASGAFHISS FYSNFPELAS  720
PKLSGTSTLS TTRLNDQPKQ TSIQPEGDNF LPQAATSNSP SSSCSQSSSS SQCYSSGTHQ  780
PSKISGNEDL TIGESSGDCE LKRVRSDAEL HAVSKEGPKL FPRSQSLRSL NEQLISDSLQ  840
PISKNTSQIA QDLDAQRIKV TYGDEKIRLR MKNKWLFKDL LHEITRRFNI DDISRFDLKY  900
LDDDSEWVLL TCDADLKECI DVCQSSQGNT IKLSLQVSHH HLDRSSGSTG PL*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017981348.1	0.0	PREDICTED: protein NLP4
Refseq	XP_017981349.1	0.0	PREDICTED: protein NLP4
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	A0A061FD78	0.0	A0A061FD78_THECC; Plant regulator RWP-RK family protein, putative
STRING	EOY15260	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3461	26	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG034391t1
Entrez Gene	18591706

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]