PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG034215t1

Common Name

TCM_034215

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 414aa MW: 45184.2 Da PI: 9.8624

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034215t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00046	173	194	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H Thecc1EG034215t1 173 CSQCGEVFPKIESLELHQAVrH 194 ******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.933	171	199	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	173	194	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.34E-25	196	409	No hit	No description
Gene3D	G3DSA:3.90.228.10	5.1E-15	198	409	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MAILTFLPEQ EAGPKKQLST KRRRKQKKPK QPSSWDQIKN LLTCKQVEGS KVHDPSKNNP 60 PHHHGYSKLG SSCNSICSFR DVVHGNTRVV HRADNSPESS TVGQETGLLR RKAANGSSTR 120 SLSGSTRSNT STTYTTSSSS RAMQFRKLSG CYECHMIVDP SRYPSSRTTI SACSQCGEVF 180 PKIESLELHQ AVRHAVSELG PEDSGRNIVE IIFKSSWLKK DNPICKIERI LKVHNTQRTI 240 QRFEDCRDAV KTRALNSTRK NPRCAADGNE LLRFHCTTLT CSLGARGSSS LCGAVPGCGV 300 CTIIRQGFQN KGGSAAVADF KGVRTTASSG RAHDSLNCKD GRRAMLVCRV IAGRVKRVTD 360 DAPLEEDNSS VSAGSYDSLA AYAGVYSNLE ELVVFNPRAI LPCFVVIYKA LES*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MAILTFLPEQ EAGPKKQLST KRRRKQKKPK QPSSWDQIKN LLTCKQVEGS KVHDPSKNNP  60
PHHHGYSKLG SSCNSICSFR DVVHGNTRVV HRADNSPESS TVGQETGLLR RKAANGSSTR  120
SLSGSTRSNT STTYTTSSSS RAMQFRKLSG CYECHMIVDP SRYPSSRTTI SACSQCGEVF  180
PKIESLELHQ AVRHAVSELG PEDSGRNIVE IIFKSSWLKK DNPICKIERI LKVHNTQRTI  240
QRFEDCRDAV KTRALNSTRK NPRCAADGNE LLRFHCTTLT CSLGARGSSS LCGAVPGCGV  300
CTIIRQGFQN KGGSAAVADF KGVRTTASSG RAHDSLNCKD GRRAMLVCRV IAGRVKRVTD  360
DAPLEEDNSS VSAGSYDSLA AYAGVYSNLE ELVVFNPRAI LPCFVVIYKA LES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017790.2	0.0	PREDICTED: uncharacterized protein LOC18591543
TrEMBL	A0A061FCE2	0.0	A0A061FCE2_THECC; C2H2-like zinc finger protein
STRING	EOY15015	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	0.0	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Thecc1EG034215t1
Entrez Gene	18591543

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]