PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG034172t3

Common Name

TCM_034172

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bZIP

Protein Properties

Length: 462aa MW: 50026.5 Da PI: 6.9848

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG034172t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35	3.2e-11	396	443	5	52
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr++r NR +A rs +RK +i+eLe kv++L++e ++L +l +l Thecc1EG034172t3 396 KRAKRILANRQSAARSKERKMRYIAELEHKVQTLQTEATTLSAQLTML 443 9*****************************************999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.9E-12	392	456	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.99	394	444	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.3E-10	396	443	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.5E-11	396	450	No hit	No description
Gene3D	G3DSA:1.20.5.170	7.1E-12	396	445	No hit	No description
CDD	cd14703	1.78E-23	397	444	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MEGISESRSN MQKLQSPPSN SIPKPQSNLD IPIFNASQMA PSPHTRLSPE NNNNKRPGIP 60 PSHPNYPAAT SPYSQIIGSR SNSQQGAPSH SRSLSQPTFF SLDSLPPWSP PPYREPSVAS 120 LSDPASNDVS MEERVVNSNV RSSLPSPVAR GVNEFRVGES SSLPPRKGHR RSSSDVPLGF 180 SAMIQSSPQL LPIGSRGVLD RSVSGRESSS GVEKPIQLVK RESEWSKDGS SNVEGMSERK 240 SEGDVADDLF NAYMNLDSLE TLNSSGTEDK DLDSRASGTK TYGGESSDNE VESRVNGHPI 300 SMQGMSAGAS NEKGVKRSAG GDIAPTARHH RSVSMDSYMG SLQFDDESSK IPPGSSVDAN 360 SGKFNLELGS SEFSEAEMKK IMENEKLAEI ASVDPKRAKR ILANRQSAAR SKERKMRYIA 420 ELEHKVQTLQ TEATTLSAQL TMLQVGINFL YLYPIIRLFS L*

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MEGISESRSN MQKLQSPPSN SIPKPQSNLD IPIFNASQMA PSPHTRLSPE NNNNKRPGIP  60
PSHPNYPAAT SPYSQIIGSR SNSQQGAPSH SRSLSQPTFF SLDSLPPWSP PPYREPSVAS  120
LSDPASNDVS MEERVVNSNV RSSLPSPVAR GVNEFRVGES SSLPPRKGHR RSSSDVPLGF  180
SAMIQSSPQL LPIGSRGVLD RSVSGRESSS GVEKPIQLVK RESEWSKDGS SNVEGMSERK  240
SEGDVADDLF NAYMNLDSLE TLNSSGTEDK DLDSRASGTK TYGGESSDNE VESRVNGHPI  300
SMQGMSAGAS NEKGVKRSAG GDIAPTARHH RSVSMDSYMG SLQFDDESSK IPPGSSVDAN  360
SGKFNLELGS SEFSEAEMKK IMENEKLAEI ASVDPKRAKR ILANRQSAAR SKERKMRYIA  420
ELEHKVQTLQ TEATTLSAQL TMLQVGINFL YLYPIIRLFS L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF048044	0.0	KF048044.1 Firmiana danxiaensis microsatellite Fir_SSR16 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017723.1	0.0	PREDICTED: uncharacterized protein LOC18591502
TrEMBL	A0A061FC82	0.0	A0A061FC82_THECC; Basic-leucine zipper transcription factor family protein, putative isoform 3
STRING	EOY14948	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38900.3	6e-94	bZIP family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG034172t3
Entrez Gene	18591502

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]