PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034171t1
Common NameTCM_034171
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family BBR-BPC
Protein Properties Length: 337aa    MW: 37161.1 Da    PI: 9.9635
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034171t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind390.62.3e-11913361301
         GAGA_bind   1 mdddgsre..rnkg.yyepa...aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllv 87 
                       mdd+g+re  r k+ +y+ a     +++   +q+m+++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern a+ erdn++++l+++
  Thecc1EG034171t1   1 MDDSGHREngRLKTdQYRTAqgqWLMHQPSMKQIMAIMAERDAAIQERNLALSEKKAAIAERDMAFLQRDAAIAERNSAIAERDNAIANLQYR 93 
                       9999*999899999899955443345556667************************************************************* PP

         GAGA_bind  88 ensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak.kkkkksek 173
                       ensla     ++p+g+q+++g+k++++ qq +++ p++++ +++ re++ +++lp++  ++e+ ++k+ k++++ak+  ++k+  k+ kk + 
  Thecc1EG034171t1  94 ENSLAtgnmPSCPPGCQISRGVKHMQHPQQnVHHlPHINEAPYNSREMHSSDTLPVTPGTSESAKSKQGKRGKEAKVIASSKKApKPLKKVKR 186
                       ***99998889*******************76779********************99988888888888877777665444433354444444 PP

         GAGA_bind 174 skkkvkkesader......................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244
                       ++++ +k    ++                      +k+++k +dl+ln+v +D+st+ +PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPL
  Thecc1EG034171t1 187 ENEDLNKIMFGKShewkggqdaggggddlnkqlvaTKSDWKGQDLGLNQVVFDDSTMAPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPL 279
                       444444443332267899*************************************************************************** PP

         GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                       P+++++r++Ri+grKmS++af+klL++LaaeG+dlsnpvDLkdhWAkHGtn+++ti+
  Thecc1EG034171t1 280 PAVPNKRHTRIGGRKMSGSAFNKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 336
                       ********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.2E-1721336IPR010409GAGA-binding transcriptional activator
PfamPF062173.7E-1011336IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MDDSGHRENG RLKTDQYRTA QGQWLMHQPS MKQIMAIMAE RDAAIQERNL ALSEKKAAIA  60
ERDMAFLQRD AAIAERNSAI AERDNAIANL QYRENSLATG NMPSCPPGCQ ISRGVKHMQH  120
PQQNVHHLPH INEAPYNSRE MHSSDTLPVT PGTSESAKSK QGKRGKEAKV IASSKKAPKP  180
LKKVKRENED LNKIMFGKSH EWKGGQDAGG GGDDLNKQLV ATKSDWKGQD LGLNQVVFDD  240
STMAPPVCSC TGVLRQCYKW GNGGWQSSCC TTTLSMYPLP AVPNKRHTRI GGRKMSGSAF  300
NKLLSRLAAE GHDLSNPVDL KDHWAKHGTN RYITIK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182KKAPKPLKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017722.10.0PREDICTED: protein BASIC PENTACYSTEINE6
SwissprotQ8L9991e-157BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A061FDZ30.0A0A061FDZ3_THECC; Basic pentacysteine 6
STRINGEOY149470.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61692647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-152basic pentacysteine 6
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]