PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034151t3
Common NameTCM_034151
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family DBB
Protein Properties Length: 291aa    MW: 31538.7 Da    PI: 6.6501
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034151t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.17.4e-0860100438
          zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 
                         C+ ++++e++ fC+ ++  lC+ C    H+       H+
  Thecc1EG034151t3  60 IQCDVCSKEEASVFCTADEAALCDACDHRVHHAnklaskHQ 100
                       57***************************964446666676 PP
2zf-B_box28.62.9e-09112150238
          zf-B_box   2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 
                       +++ C+ ++ek++ lfC++++  lC+dC + +H    Ht
  Thecc1EG034151t3 112 QAPLCDICQEKRAFLFCQQDRAILCRDCDVPIHAAneHT 150
                       7899****************************9556765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.5E-1057104IPR000315B-box-type zinc finger
PROSITE profilePS5011911.24957104IPR000315B-box-type zinc finger
PfamPF006437.0E-660100IPR000315B-box-type zinc finger
CDDcd000214.02E-660104No hitNo description
PROSITE profilePS5011910.324111158IPR000315B-box-type zinc finger
SMARTSM003361.8E-15111158IPR000315B-box-type zinc finger
PfamPF006431.6E-7112150IPR000315B-box-type zinc finger
CDDcd000214.32E-10114158No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MNPHYVTAIL FYSLLSTDAL ITLSSQLFWG SKLPQSLTQY SLSEREIGSK EIKQIKQMKI  60
QCDVCSKEEA SVFCTADEAA LCDACDHRVH HANKLASKHQ RFSLLHPASS KQAPLCDICQ  120
EKRAFLFCQQ DRAILCRDCD VPIHAANEHT QKHNRFLLTG VKLSATSALY TSSSSSSIAS  180
LSTGCDSVPE FESQPSIKNP VSASPTNLNP FSLAKSSPVS TTAAAVTNKS GGDNLLANEG  240
GGSTSSISEY LIEMLPGWHF EDFLDSSSPP FGFCKVCIDP SLIYCISLSR *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0480441e-57KF048044.1 Firmiana danxiaensis microsatellite Fir_SSR16 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017685.20.0PREDICTED: B-box zinc finger protein 21
SwissprotQ9LQZ76e-81BBX21_ARATH; B-box zinc finger protein 21
TrEMBLA0A061FDW00.0A0A061FDW0_THECC; Salt tolerance 2, putative isoform 3
STRINGEOY149100.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-73salt tolerance homolog2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Xu D, et al.
    BBX21, an Arabidopsis B-box protein, directly activates HY5 and is targeted by COP1 for 26S proteasome-mediated degradation.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(27): p. 7655-60
    [PMID:27325768]
  3. Xu DB, et al.
    The G-Protein Ī² Subunit AGB1 Promotes Hypocotyl Elongation through Inhibiting Transcription Activation Function of BBX21 inĀ Arabidopsis.
    Mol Plant, 2017. 10(9): p. 1206-1223
    [PMID:28827171]
  4. Xu D,Jiang Y,Li J,Holm M,Deng XW
    The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.
    Plant Physiol., 2018. 176(3): p. 2365-2375
    [PMID:29259103]
  5. Job N,Yadukrishnan P,Bursch K,Datta S,Johansson H
    Two B-Box Proteins Regulate Photomorphogenesis by Oppositely Modulating HY5 through their Diverse C-Terminal Domains.
    Plant Physiol., 2018. 176(4): p. 2963-2976
    [PMID:29439209]
  6. Crocco CD,Ocampo GG,Ploschuk EL,Mantese A,Botto JF
    Heterologous Expression of AtBBX21 Enhances the Rate of Photosynthesis and Alleviates Photoinhibition in Solanumtuberosum.
    Plant Physiol., 2018. 177(1): p. 369-380
    [PMID:29555784]
  7. Kang X, et al.
    HRB2 and BBX21 interaction modulates Arabidopsis ABI5 locus and stomatal aperture.
    Plant Cell Environ., 2018. 41(8): p. 1912-1925
    [PMID:29748960]