PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG034151t1 | ||||||||
Common Name | TCM_034151 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | DBB | ||||||||
Protein Properties | Length: 366aa MW: 39781.8 Da PI: 6.4985 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 23.7 | 1e-07 | 60 | 100 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++++e++ fC+ ++ lC+ C H+ H+ Thecc1EG034151t1 60 IQCDVCSKEEASVFCTADEAALCDACDHRVHHAnklaskHQ 100 57**************************9964446666666 PP | |||||||
2 | zf-B_box | 28.2 | 4e-09 | 112 | 150 | 2 | 38 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 +++ C+ ++ek++ lfC++++ lC+dC + +H Ht Thecc1EG034151t1 112 QAPLCDICQEKRAFLFCQQDRAILCRDCDVPIHAAneHT 150 7899****************************9556765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.5E-10 | 57 | 104 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 11.249 | 57 | 104 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.96E-7 | 60 | 104 | No hit | No description |
Pfam | PF00643 | 9.8E-6 | 60 | 100 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.324 | 111 | 158 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.8E-15 | 111 | 158 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.3E-7 | 112 | 150 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.59E-11 | 114 | 158 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009641 | Biological Process | shade avoidance | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MNPHYVTAIL FYSLLSTDAL ITLSSQLFWG SKLPQSLTQY SLSEREIGSK EIKQIKQMKI 60 QCDVCSKEEA SVFCTADEAA LCDACDHRVH HANKLASKHQ RFSLLHPASS KQAPLCDICQ 120 EKRAFLFCQQ DRAILCRDCD VPIHAANEHT QKHNRFLLTG VKLSATSALY TSSSSSSIAS 180 LSTGCDSVPE FESQPSIKNP VSASPTNLNP FSLAKSSPVS TTAAAVTNKS GGDNLLANEG 240 GGSTSSISEY LIEMLPGWHF EDFLDSSSPP FGFCKSDDGM LPFSDADLES NKSSFSPESL 300 GLWVPQSPSA LYPPQYSSTM GGQIGFKETK EIIGMKANRR WTDDAFTVPQ ISLPSTGSKR 360 TRPLW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that acts as positive regulator of seedling photomorphogenesis (PubMed:17965270). Acts downstream of COP1 and play an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). {ECO:0000269|PubMed:17965270, ECO:0000269|PubMed:21070414}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF048044 | 2e-57 | KF048044.1 Firmiana danxiaensis microsatellite Fir_SSR16 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007017685.2 | 0.0 | PREDICTED: B-box zinc finger protein 21 | ||||
Swissprot | Q9LQZ7 | 3e-96 | BBX21_ARATH; B-box zinc finger protein 21 | ||||
TrEMBL | A0A061FC44 | 0.0 | A0A061FC44_THECC; Salt tolerance 2, putative isoform 1 | ||||
STRING | EOY14910 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5400 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 7e-89 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG034151t1 |
Entrez Gene | 18591484 |