PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034117t1
Common NameTCM_034117
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TALE
Protein Properties Length: 461aa    MW: 50983.2 Da    PI: 6.4108
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034117t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.56.3e-103814181954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +e+  LA+++gLt++qV++WF N R +
  Thecc1EG034117t1 381 FEHflHPYPTDSEKLMLASQTGLTKNQVSNWFINARVR 418
                       554459******************************88 PP
2BELL101.75.4e-33243314172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       e+++lq++ akL+ lleeV+ rY++y++q++ v+ssFea ag+gsak Yt+lAl+a+SrhF +L+ ai++qi
  Thecc1EG034117t1 243 EKHDLQIRLAKLIGLLEEVEIRYEKYYQQMEEVVSSFEALAGVGSAKTYTALALQAMSRHFGSLRGAIISQI 314
                       6799*******************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.6E-34177312IPR006563POX domain
PfamPF075261.3E-37183310IPR006563POX domain
PROSITE profilePS5007112.179359422IPR001356Homeobox domain
SMARTSM003895.1E-10362426IPR001356Homeobox domain
CDDcd000864.13E-12362423No hitNo description
Gene3DG3DSA:1.10.10.609.5E-28367428IPR009057Homeodomain-like
SuperFamilySSF466896.42E-18368430IPR009057Homeodomain-like
PfamPF059201.7E-17379418IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MVSRDSPPNP ASSILHHFII SDSINSQNQF EGQHFGAYGS ALRGNHHNTF PQSLGLLPSI  60
QSLGERMSRS MDLLPAPIVA EESEISQTRH LMDLLGAANE TNHQTQRLSL SLGSHMLGPS  120
LNSNIASSSY LLSGAEDREV CNPGVEHISD DYSFTASTFA SASTSLHRSC STAYGAESFG  180
TAIGNSRYLR PAQSLLDEVV NVGSKNFEDH FFGKLYLGDR GVGSRLSSEL KAEFCSNEIS  240
LPEKHDLQIR LAKLIGLLEE VEIRYEKYYQ QMEEVVSSFE ALAGVGSAKT YTALALQAMS  300
RHFGSLRGAI ISQINVIRKR FSQDLPKINR GLSQLSLFDR DSRHNRLSLQ QLGMIPSQRQ  360
AWRPIRGLPE TSVAILRSWL FEHFLHPYPT DSEKLMLASQ TGLTKNQVSN WFINARVRLW  420
KPMIEEMYKE EFADSPQDSG PSLASSSMGR EGIAADQAED *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A8e-17368425158Homeobox protein Meis1
4xrs_B8e-17368425158Homeobox protein Meis1
5bng_A1e-16368426159Homeobox protein Meis2
5bng_B1e-16368426159Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017980815.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD11e-105BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A061FK320.0A0A061FK32_THECC; BEL1-like homeodomain protein 11 isoform 1
STRINGEOY148640.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97362734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-107BEL1-like homeodomain 11
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]