PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG034116t1
Common NameTCM_034116
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family TALE
Protein Properties Length: 685aa    MW: 75325.7 Da    PI: 6.2403
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG034116t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.11.7e-094314681954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +e+  LAk++gLt +qV +WF N R +
  Thecc1EG034116t1 431 FEHflHPYPKDSEKIMLAKQTGLTRNQVANWFINARVR 468
                       664459******************************88 PP
2BELL125.91.5e-40294365172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       erq+lq+kk+kLls+l+eVd+rY+qy++q+++v+ssF+ vag g+akpYt+lAl++iSrhFrcL dai++qi
  Thecc1EG034116t1 294 ERQDLQNKKTKLLSMLDEVDRRYRQYYHQMKIVVSSFDFVAGSGAAKPYTALALQTISRHFRCLHDAISGQI 365
                       799********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.1E-65227363IPR006563POX domain
PfamPF075262.3E-49233362IPR006563POX domain
PROSITE profilePS5007112.374409472IPR001356Homeobox domain
CDDcd000865.26E-13412473No hitNo description
SMARTSM003898.0E-10412476IPR001356Homeobox domain
SuperFamilySSF466891.75E-17413479IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-28415478IPR009057Homeodomain-like
PfamPF059201.8E-17429468IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MATYYPTLSY QRDNLSTTYL GDQKPDSYLG SSSLPGNSIY LNQASSAGPF SEILSGSSLS  60
LQNCVQIPSI GGRNEMSFIP PSSDTVSLQA VDGQLNITTS NSLCNPVAGD PPVLPRSVLD  120
GEQSSQSQGL SLSLGSHISS GVSIPPFQYQ YQGYSSFFSG HLPFSGKGTI PCTGDESKRS  180
KELKISDGVQ FGFPGGNNDA FETDALSNPQ GSISNKQMHS DIYQFESGFA NTISNSKYLR  240
VAQELLDEVM NIRKALKQPD LDKNISSQPK SSNGMSSEPS ESVNNSSSEI SPAERQDLQN  300
KKTKLLSMLD EVDRRYRQYY HQMKIVVSSF DFVAGSGAAK PYTALALQTI SRHFRCLHDA  360
ISGQIQLIQR SLGEQENSSN NQGGAIPRLR YVDHQLRQQR ALQQLGVMRN AWRPQRGLPE  420
SSVSILRAWL FEHFLHPYPK DSEKIMLAKQ TGLTRNQVAN WFINARVRLW KPMIEEMYKE  480
EFGEMDSNFK SSLENAAKAT RENSSASEDR GEELQESMTS KVADADNVQP GQIQHQKPDH  540
IPDVELNRPI ARSMFQNNAI GDTGSPAGMK LQVDNRSNME SHNPYPDTVI PSSQHGRGTF  600
VAGDTMYDLT KLSGFTVGGQ VSLALGLQHH ENNNVFPISG ETNMRGNSKV ASSVGPETVD  660
FHCMDPGNQQ DRFGNPHILH DFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A3e-16418475158Homeobox protein Meis1
4xrs_B3e-16418475158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981722.10.0PREDICTED: BEL1-like homeodomain protein 3
RefseqXP_017981723.10.0PREDICTED: BEL1-like homeodomain protein 3
TrEMBLA0A061FD760.0A0A061FD76_THECC; BEL1-like homeodomain protein 3, putative
STRINGEOY148630.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16400.11e-110BEL1-like homeodomain 7
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]