PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG034059t1 | ||||||||
Common Name | TCM_034059 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB_related | ||||||||
Protein Properties | Length: 87aa MW: 9814.96 Da PI: 9.4291 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.8 | 2.5e-08 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +l+ +a + + ++ +W ++a+ +g +++++++ ++ Thecc1EG034059t1 15 YWTPKQNKLFEKALAVYDKDtpdRWQKVAAAVG-EKSAEEVRRHY 58 5********************************.9*********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.133 | 8 | 62 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.8E-6 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.79E-12 | 14 | 70 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.5E-7 | 15 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.34E-6 | 16 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MASSSMTSSR DSNSYWTPKQ NKLFEKALAV YDKDTPDRWQ KVAAAVGEKS AEEVRRHYEI 60 LVADLMYIES GQVPIPNYRS TGSNRR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-33 | 6 | 84 | 1 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007017563.1 | 1e-58 | PREDICTED: protein RADIALIS-like 3 | ||||
Refseq | XP_017981098.1 | 1e-58 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 2e-33 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A061FD09 | 3e-57 | A0A061FD09_THECC; RAD-like 6 | ||||
STRING | EOY14788 | 5e-58 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 6e-34 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG034059t1 |
Entrez Gene | 18591400 |
Publications ? help Back to Top | |||
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