PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG034046t1 | ||||||||
Common Name | TCM_034046 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB_related | ||||||||
Protein Properties | Length: 93aa MW: 10538.9 Da PI: 8.8514 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.5 | 3.6e-09 | 6 | 52 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT+ +l+ +a + + ++ +W+ ar +g g+t +++k ++ ++ Thecc1EG034046t1 6 TWTPKQNKLFENALAIYDKDtpdRWHNLARAVG-GKTVEEVKMHYENL 52 7********************************.***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.103 | 2 | 57 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-8 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.55E-13 | 5 | 61 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.4E-4 | 6 | 56 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.86E-7 | 6 | 53 | No hit | No description |
Pfam | PF00249 | 3.1E-6 | 6 | 52 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MASGSTWTPK QNKLFENALA IYDKDTPDRW HNLARAVGGK TVEEVKMHYE NLVEDIKQIE 60 SGQVPLPPYK KAGGSKGYSY MDEEQRLRNL RL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-33 | 2 | 92 | 6 | 92 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007017546.1 | 5e-64 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 2e-34 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A061FCL0 | 1e-62 | A0A061FCL0_THECC; DnaJ subfamily C member 2 | ||||
STRING | EOY14771 | 2e-63 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 7e-37 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG034046t1 |
Entrez Gene | 18591388 |
Publications ? help Back to Top | |||
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