PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG033940t1

Common Name

TCM_033940

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

G2-like

Protein Properties

Length: 329aa MW: 36276.7 Da PI: 9.6467

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG033940t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7.3e-32	130	183	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Thecc1EG033940t1 130 PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 183 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.59E-15	127	184	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-28	128	184	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-23	130	183	IPR006447	Myb domain, plants
Pfam	PF00249	2.1E-7	131	182	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0080060	Biological Process	integument development
GO:0005618	Cellular Component	cell wall
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MFTSSNNIMR TTPLPDLSLQ ISPPSVSDCK AKEMAYDGLP RKSIYSDRSS TTDSGSSGSD 60 LSHENGYSNP GPGEPTLSLG FEMADLGPPH LQLPRNLNHH QHQYQPQIYS RDFKRNARMI 120 NGVKRSIRAP RMRWTTTLHA HFVHAVQLLG GHERATPKSV LELMNVKDLT LAHVKSHLQM 180 YRTVKSTDKG SGQGQTEMSL NQRTGIVDLD GRLSCGKADT NPSYSLKPSS PSSQPTPQRT 240 QSGSWLSSTK TNNLSISSHG NGLTFKPNHV KVDGDKAVLH VSDRMKERLD SSSLSPSDMF 300 LNLEFTLGRP SWQMDYAESS NELTLLKC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-17	131	185	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-17	131	185	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-17	131	185	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-17	131	185	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-17	131	185	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-17	131	185	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-17	131	185	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-17	131	185	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-17	131	185	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-17	131	185	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-17	131	185	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-17	131	185	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00107	PBM	Transfer from AT5G42630	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017401.2	0.0	PREDICTED: probable transcription factor KAN4
TrEMBL	A0A061FC76	0.0	A0A061FC76_THECC; Homeodomain-like superfamily protein, putative
STRING	EOY14626	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6572	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.1	8e-71	G2-like family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG033940t1
Entrez Gene	18591291

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]