PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG033928t1 | ||||||||
Common Name | TCM_033928 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | Dof | ||||||||
Protein Properties | Length: 245aa MW: 24958.7 Da PI: 8.1902 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.6 | 2.8e-38 | 26 | 85 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++ l+cprCdst tkfCyynny+lsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+s Thecc1EG033928t1 26 TEPLPCPRCDSTSTKFCYYNNYNLSQPRYFCKSCRRYWTQGGTLRNVPVGGGTRKASKRS 85 57899**************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 7.7E-33 | 28 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.012 | 29 | 83 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 31 | 67 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-19 | 33 | 77 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MPTDSGDRRP VRVPGTMGSH PPPKLTEPLP CPRCDSTSTK FCYYNNYNLS QPRYFCKSCR 60 RYWTQGGTLR NVPVGGGTRK ASKRSRCSSG SSPSVATSSS SSSVTHEVES MPMAAANPVS 120 VMPGPGVKPE MGLADVNLNE SVDLPVNGSF TSFLNSQGEG YLSLGGYGFG AGSGFDGVWG 180 YPGNGYLGGF SGGGSGGPGG VIGGTTGCNT WQTTNDVEGG GGLADGDCFG WPGLAISAPG 240 KGLK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007017388.2 | 1e-174 | PREDICTED: dof zinc finger protein DOF1.6 | ||||
TrEMBL | A0A061FCH9 | 1e-173 | A0A061FCH9_THECC; Dof-type zinc finger DNA-binding family protein, putative | ||||
STRING | EOY14613 | 1e-174 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9465 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G47655.1 | 9e-28 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG033928t1 |
Entrez Gene | 18591281 |
Publications ? help Back to Top | |||
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