PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG033870t1 | ||||||||
Common Name | TCM_033870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | B3 | ||||||||
Protein Properties | Length: 229aa MW: 26058.2 Da PI: 10.6047 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.4 | 4.1e-16 | 130 | 218 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 k +++s+v+ +l lp +f++++ +k ++ +tl de+g+++ + rk++ l++GWk+F+ a++L +gD +vF+l++ ++f +v Thecc1EG033870t1 130 TKSMLQSHVTGGFWLGLPVHFCKRNL-PK-RDEVMTLIDEEGQEYPAIYLARKTG----LSGGWKGFAVAHKLVDGDALVFQLVRPTTF--KV 214 58999*****************9994.33.5568***************656665....************************986777..88 PP EEE- CS B3 95 kvfr 98 ++r Thecc1EG033870t1 215 YIIR 218 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.63E-24 | 123 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.6E-19 | 123 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.02E-26 | 127 | 218 | No hit | No description |
PROSITE profile | PS50863 | 12.041 | 129 | 220 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.1E-23 | 129 | 220 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-14 | 130 | 218 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MVVARQELSY EECRRKRVEE NKKRMEALNL PQLSQALRTP SFKPSPRKQV KPRTGEKQLV 60 VVRRSSRVAN KPAPVYHEVL VEKVIIPRRR VSKHRDLSNR VYASDEARAE ALEKAEKLES 120 GLEPDFPTLT KSMLQSHVTG GFWLGLPVHF CKRNLPKRDE VMTLIDEEGQ EYPAIYLARK 180 TGLSGGWKGF AVAHKLVDGD ALVFQLVRPT TFKVYIIRVK GSEQSNKL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007017287.1 | 1e-168 | PREDICTED: B3 domain-containing protein At5g42700 | ||||
Refseq | XP_017981234.1 | 1e-168 | PREDICTED: B3 domain-containing protein At5g42700 | ||||
Refseq | XP_017981235.1 | 1e-168 | PREDICTED: B3 domain-containing protein At5g42700 | ||||
Refseq | XP_017981236.1 | 1e-168 | PREDICTED: B3 domain-containing protein At5g42700 | ||||
Swissprot | Q9FMZ4 | 2e-80 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | A0A061FCQ7 | 1e-166 | A0A061FCQ7_THECC; AP2/B3-like transcriptional factor family protein, putative | ||||
STRING | EOY14512 | 1e-167 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3744 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 7e-76 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG033870t1 |
Entrez Gene | 18591228 |
Publications ? help Back to Top | |||
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