PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG033803t1

Common Name

TCM_033803

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 267aa MW: 29652.7 Da PI: 7.1633

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG033803t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.4	5.3e-13	54	101	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h Er RR+++++ f+ L llP++ K +K++i+ +Av YIk+Lq Thecc1EG033803t1 54 MHIWTERERRKKMRNMFSSLHALLPQL----PAKADKSTIVDEAVTYIKNLQ 101 56678*******************6....39****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.89E-16	48	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.884	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.00E-12	53	99	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.7E-15	54	112	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-10	55	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-9	58	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	1.21E-5	184	238	No hit	No description
Gene3D	G3DSA:3.30.70.260	8.1E-4	188	261	No hit	No description
CDD	cd04873	1.77E-4	189	251	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MKPYNSSSNS PYIDMEMGTV AVAQGGQKRS RKGGFKNGKA KVCGDAGDQS VHEMHIWTER 60 ERRKKMRNMF SSLHALLPQL PAKADKSTIV DEAVTYIKNL QQTLQTLQKQ KLEKLRSATM 120 VDYDQSSIIT SQMQVPESRE AFLADQGPSN NYPMTTDVSQ TFPAPISPAC FQTWFSPNVV 180 INMCGDDAQV SVCSPRKPGV LTTIMYILEK HQLEVVSAHI SSDQYRSMYM IHVHADGASD 240 QFSEAVSVEE TFKLAAGEMN LWLLSC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017189.1	0.0	PREDICTED: transcription factor bHLH95
TrEMBL	A0A061FIU3	0.0	A0A061FIU3_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOY14414	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5074	25	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	7e-41	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG033803t1
Entrez Gene	18591166

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]