PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG033802t1 | ||||||||
Common Name | TCM_033802 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 333aa MW: 35937.7 Da PI: 5.921 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.9 | 5.8e-16 | 149 | 195 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq Thecc1EG033802t1 149 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 195 6*************************7.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 3.1E-20 | 142 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-20 | 142 | 205 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.86 | 145 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.90E-18 | 148 | 199 | No hit | No description |
Pfam | PF00010 | 2.0E-13 | 149 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.3E-18 | 151 | 200 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 333 aa Download sequence Send to blast |
MADLYGTPAS SNPEPEEIST FLSQLLHNSS ASSSSSSSCM QFKTKSIHTF PSHAPEFSTP 60 AANSRAGMAI PVEDQYRLGG SAVRAESEPR VNFSDPETYF GANVKDSADI ALSSAGEFSY 120 DSEVQEPSKA PSNQERPRSS SKRSRAAEVH NLSEKRRRSR INEKMKALQN LIPNSNKTDK 180 ASMLDEAIEY LKQLQLQVQM LSMRNGLSLY PMCLPGVLQP TQLPPTGMGY DEGNRFFSPN 240 TEAGTFSSNE ESLMNTPFNL SNPCTISNQP IVAPSVANIS NLEASFGFKS SAEAHCGSFS 300 HSTSSKEICK EGRSQLQLEV NHAGNNSSSG VS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that plays a role in floral organogenesis. Promotes the growth of carpel margins and of pollen tract tissues derived from them. {ECO:0000269|PubMed:10225997, ECO:0000269|Ref.8}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by the A class gene AP2 in the first whorl and by ARF3/ETT in gynoecium. {ECO:0000269|PubMed:11245574}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007017187.2 | 0.0 | PREDICTED: transcription factor SPATULA isoform X2 | ||||
Swissprot | Q9FUA4 | 1e-40 | SPT_ARATH; Transcription factor SPATULA | ||||
TrEMBL | A0A061FCF4 | 0.0 | A0A061FCF4_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative isoform 1 | ||||
STRING | EOY14413 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36930.1 | 6e-42 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG033802t1 |
Entrez Gene | 18591165 |