PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG033799t1

Common Name

TCM_033799

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 284aa MW: 32055.1 Da PI: 6.5099

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG033799t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	95.4	9.1e-30	27	161	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratksgy 82 lppG+rF P++eel+++yL+ k +++ + + i+e+++y++eP+dLp+ + ++ ++F+ +++k g+r++r +k g+ Thecc1EG033799t1 27 LPPGCRFFPSEEELLNHYLTGKNSSDAsdradMYGYDLIRELNLYDYEPSDLPEgvcfvhG--CRGRKRHWFCYTERK---GERSKRRAKGGF 114 79******************9998845543333458***********65665332..355666777777775...679999899* PP NAM 83 WkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128 W++ gk k+v++ ++ l g+k+ +vfy++ + +k+++t+W+m ey+l Thecc1EG033799t1 115 WRKIGKVKDVFDGENVLLGTKTRFVFYEAnSVKKAVRTSWIMYEYAL 161 **********99999******763778899*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-34	22	177	IPR003441	NAC domain
PROSITE profile	PS51005	36.773	27	177	IPR003441	NAC domain
Pfam	PF02365	1.1E-17	28	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MCNNSDSILP LIEIPGDSSR TRSLYHLPPG CRFFPSEEEL LNHYLTGKNS SDASDRADMY 60 GYDLIRELNL YDYEPSDLPE GVCFVHGCRG RKRHWFCYTE RKGERSKRRA KGGFWRKIGK 120 VKDVFDGENV LLGTKTRFVF YEANSVKKAV RTSWIMYEYA LLHHRKASFV LCRVFVKSRA 180 GNSVSENVLS SCAEESVAAV RHIGIQHDGF LSPDILEAEI NGDDFTKELD QSISTRSVSV 240 PSFEFPSVVQ PELPNDLVGS QLATNNLWAI VEGNFIELND LGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	8e-18	26	178	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017182.2	0.0	PREDICTED: NAC domain-containing protein 92
TrEMBL	A0A061FCE9	0.0	A0A061FCE9_THECC; NAC domain protein, IPR003441, putative
STRING	EOY14407	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17192	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	3e-23	NAC family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG033799t1
Entrez Gene	18591163

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]