PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG033790t4 | ||||||||
Common Name | TCM_033790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C2H2 | ||||||||
Protein Properties | Length: 412aa MW: 47208.7 Da PI: 8.4438 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 156 | 179 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +L++H + H Thecc1EG033790t4 156 YICGVCGRKCKTNLDLRKHFKQlH 179 89*****************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.40.50.1010 | 1.9E-6 | 76 | 146 | IPR029060 | PIN domain-like |
PROSITE profile | PS50157 | 10.596 | 156 | 184 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 158 | 179 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 1.76E-12 | 168 | 310 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 1.9E-6 | 241 | 295 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MNPLCNSLKS LHLNPAPLLS KPGLHFSHSL SPAFPTPFKT KSPSRQCHLT IKFIASNANA 60 VEIDMVRNKQ GVYAPKQKKV VILWDLDNKP PRGPPYEAVV ALKKVAEKFG EIVDMSAYAN 120 RHAFIHLPQW VLKERRERKN LDILERKGIV TLSDPYICGV CGRKCKTNLD LRKHFKQLHE 180 RERQKKLNRM KSLKGKKRQR FKERYISGNH KYNEAARSLV TPKVGYGLAS ELRRAGVYVK 240 TVEDKPQAAD WALKRQMQHS MSRGIDWLFL VSDDKDFTEM LRRAREENLG TVVVGDRDRG 300 LGRHADLWVS WIGVENGEVT EKDLVPKRWR REDDGSFSVS EFDSRSLGEL DGVVNELVVG 360 RNEFGGLRIS VFSEGEEGDE DEWEIEKADD EDYLLEDSED EVIFEEDGYF L* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007017172.2 | 0.0 | PREDICTED: uncharacterized protein LOC18591156 | ||||
TrEMBL | A0A061FBW0 | 0.0 | A0A061FBW0_THECC; C2H2-like zinc finger protein isoform 2 | ||||
STRING | EOY14396 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-176 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG033790t4 |
Entrez Gene | 18591156 |
Publications ? help Back to Top | |||
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