PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG033790t3

Common Name

TCM_033790

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C2H2

Protein Properties

Length: 412aa MW: 47208.7 Da PI: 8.4438

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG033790t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	156	179	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg+ ++++ +L++H + H Thecc1EG033790t3 156 YICGVCGRKCKTNLDLRKHFKQlH 179 89*****************98766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.40.50.1010	1.9E-6	76	146	IPR029060	PIN domain-like
PROSITE profile	PS50157	10.596	156	184	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	158	179	IPR007087	Zinc finger, C2H2
CDD	cd06167	1.76E-12	168	310	No hit	No description
Gene3D	G3DSA:3.40.50.1010	1.9E-6	241	295	IPR029060	PIN domain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MNPLCNSLKS LHLNPAPLLS KPGLHFSHSL SPAFPTPFKT KSPSRQCHLT IKFIASNANA 60 VEIDMVRNKQ GVYAPKQKKV VILWDLDNKP PRGPPYEAVV ALKKVAEKFG EIVDMSAYAN 120 RHAFIHLPQW VLKERRERKN LDILERKGIV TLSDPYICGV CGRKCKTNLD LRKHFKQLHE 180 RERQKKLNRM KSLKGKKRQR FKERYISGNH KYNEAARSLV TPKVGYGLAS ELRRAGVYVK 240 TVEDKPQAAD WALKRQMQHS MSRGIDWLFL VSDDKDFTEM LRRAREENLG TVVVGDRDRG 300 LGRHADLWVS WIGVENGEVT EKDLVPKRWR REDDGSFSVS EFDSRSLGEL DGVVNELVVG 360 RNEFGGLRIS VFSEGEEGDE DEWEIEKADD EDYLLEDSED EVIFEEDGYF L*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MNPLCNSLKS LHLNPAPLLS KPGLHFSHSL SPAFPTPFKT KSPSRQCHLT IKFIASNANA  60
VEIDMVRNKQ GVYAPKQKKV VILWDLDNKP PRGPPYEAVV ALKKVAEKFG EIVDMSAYAN  120
RHAFIHLPQW VLKERRERKN LDILERKGIV TLSDPYICGV CGRKCKTNLD LRKHFKQLHE  180
RERQKKLNRM KSLKGKKRQR FKERYISGNH KYNEAARSLV TPKVGYGLAS ELRRAGVYVK  240
TVEDKPQAAD WALKRQMQHS MSRGIDWLFL VSDDKDFTEM LRRAREENLG TVVVGDRDRG  300
LGRHADLWVS WIGVENGEVT EKDLVPKRWR REDDGSFSVS EFDSRSLGEL DGVVNELVVG  360
RNEFGGLRIS VFSEGEEGDE DEWEIEKADD EDYLLEDSED EVIFEEDGYF L*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007017172.2	0.0	PREDICTED: uncharacterized protein LOC18591156
TrEMBL	A0A061FBW0	0.0	A0A061FBW0_THECC; C2H2-like zinc finger protein isoform 2
STRING	EOY14396	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52010.1	1e-176	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Thecc1EG033790t3
Entrez Gene	18591156

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]