PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG033777t1
Common NameTCM_033777
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WRKY
Protein Properties Length: 360aa    MW: 39276.4 Da    PI: 10.1119
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG033777t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.73.8e-31287344359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYeg+Hnh+
  Thecc1EG033777t1 287 DDFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERAVDDPRMLIVTYEGDHNHS 344
                       99************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.4E-18238283IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.808.2E-33273344IPR003657WRKY domain
PROSITE profilePS5081130.664280346IPR003657WRKY domain
SuperFamilySSF1182902.48E-26283344IPR003657WRKY domain
SMARTSM007745.4E-37285345IPR003657WRKY domain
PfamPF031061.4E-26287343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MAVELMMGYG RGDSFAGKME ENALREAATA GIQGVEELIR LMSNSQQLYN QDASFKTSSP  60
SGPEPAMEIQ AVTDKTVNSF KKVISLLGRP RTGHARFRRA PLTSLQQEEK QQQQDLQQPR  120
QKIQESGTCS VQVNKDQVSA FKPFCPTPGH RLPPLPHNHH QSKSSPLLVA RSGLLERNEA  180
PTTINFTSSP PLSAGNSFIS SLTGDTDSMQ PSFSSGFQFT SPSHVPSSGK PPLSSSLKRK  240
CNSVDDAALK CGSASGRCHC SKKRKSRVKR VIRVPAISNK MADIPPDDFS WRKYGQKPIK  300
GSPHPRGYYK CSSVRGCPAR KHVERAVDDP RMLIVTYEGD HNHSHNITDA PAAVVLESS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21273343271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007017155.20.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-120WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A061FAK30.0A0A061FAK3_THECC; WRKY DNA-binding protein 7
STRINGEOY143800.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17152887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-101WRKY DNA-binding protein 7
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]