PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG033706t5
Common NameTCM_033706
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C3H
Protein Properties Length: 402aa    MW: 43394.4 Da    PI: 8.5641
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG033706t5genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.24.2e-117599327
                      S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      ++ C++f++t  Ck+G++CkF+H++
  Thecc1EG033706t5 75 EPDCPYFLKTQRCKFGSKCKFNHPK 99
                      789********************96 PP
2zf-CCCH34.24.3e-11122146327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++ C+f+ +tG Ck+G++CkF+H++
  Thecc1EG033706t5 122 EPSCSFYVKTGKCKFGATCKFHHPK 146
                       577********************96 PP
3zf-CCCH39.31.1e-12192216226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       +++ C+f+++tG CkyG++C+++H+
  Thecc1EG033706t5 192 DEVDCPFYLKTGSCKYGSSCRYNHP 216
                       6789********************9 PP
4zf-CCCH41.71.9e-13284308226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++ +C ++++tG Ck+GdrCkF+H+
  Thecc1EG033706t5 284 GQTECEYYMKTGDCKFGDRCKFHHP 308
                       6789********************8 PP
5zf-CCCH391.3e-12340361627
                       -SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                       C+++++tGtCkyG++CkF H+p
  Thecc1EG033706t5 340 CPYYMKTGTCKYGATCKFDHPP 361
                       ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-47299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.87872100IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-87599IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-677102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-578100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511119147IPR000571Zinc finger, CCCH-type
SMARTSM003568.8E-5119146IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6122146IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-8122146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4125145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.061190218IPR000571Zinc finger, CCCH-type
SMARTSM003562.9E-6190217IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10192216IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-6193217IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5196215IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-7282310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.591282310IPR000571Zinc finger, CCCH-type
SMARTSM003569.1E-7282309IPR000571Zinc finger, CCCH-type
PfamPF006427.6E-11284308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-6288308IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.272334362IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-6334361IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6338361IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10340361IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-6340359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MDTRLDTRAH HLPPLSPPLS SVIWTPRPRL IRICFTTSSP GLQVPTSLPP PGPSNAPLKV  60
PLATTSESLP ERAGEPDCPY FLKTQRCKFG SKCKFNHPKD KLAISGAFEN IQVAVLPERP  120
SEPSCSFYVK TGKCKFGATC KFHHPKDIQI ASSGQDNARG EQPEIVTKTG GATADVKPAL  180
FHNSKGLPIR PDEVDCPFYL KTGSCKYGSS CRYNHPDRNA FNPPAAVLGH SLVASASNLN  240
IGVVTPAASI YQTIDPRLGQ STLLAQPTFP TLGVAPTVYP QRPGQTECEY YMKTGDCKFG  300
DRCKFHHPID RSVSKTKQTS EQAVKLTLAG LPRREGGVHC PYYMKTGTCK YGATCKFDHP  360
PPGEVMGIAT AQGTSTTVGG EEKGEMEEAE TVETNTAMRS C*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007022804.20.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X4
SwissprotQ941Q31e-135C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A061FIL40.0A0A061FIL4_THECC; Floral homeotic protein isoform 5
STRINGEOY143250.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-137floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]