PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG033706t4 | ||||||||
Common Name | TCM_033706 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | C3H | ||||||||
Protein Properties | Length: 367aa MW: 40245.9 Da PI: 8.6753 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.4 | 3.8e-11 | 75 | 99 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++t Ck+G++CkF+H++ Thecc1EG033706t4 75 EPDCPYFLKTQRCKFGSKCKFNHPK 99 789********************96 PP | |||||||
2 | zf-CCCH | 34.3 | 3.9e-11 | 122 | 146 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+ +tG Ck+G++CkF+H++ Thecc1EG033706t4 122 EPSCSFYVKTGKCKFGATCKFHHPK 146 577********************96 PP | |||||||
3 | zf-CCCH | 39.5 | 9.5e-13 | 192 | 216 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f+++tG CkyG++C+++H+ Thecc1EG033706t4 192 DEVDCPFYLKTGSCKYGSSCRYNHP 216 6789********************9 PP | |||||||
4 | zf-CCCH | 41.9 | 1.7e-13 | 284 | 308 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ +C ++++tG Ck+GdrCkF+H+ Thecc1EG033706t4 284 GQTECEYYMKTGDCKFGDRCKFHHP 308 6789********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 1.2E-4 | 72 | 99 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 72 | 100 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 75 | 99 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-6 | 77 | 102 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.6E-5 | 78 | 100 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.511 | 119 | 147 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.8E-5 | 119 | 146 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-8 | 122 | 146 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 122 | 146 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 125 | 145 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.061 | 190 | 218 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-6 | 190 | 217 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-10 | 192 | 216 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 193 | 217 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.7E-5 | 196 | 215 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-7 | 282 | 310 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.591 | 282 | 310 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.1E-7 | 282 | 309 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.8E-11 | 284 | 308 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-6 | 288 | 308 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MDTRLDTRAH HLPPLSPPLS SVIWTPRPRL IRICFTTSSP GLQVPTSLPP PGPSNAPLKV 60 PLATTSESLP ERAGEPDCPY FLKTQRCKFG SKCKFNHPKD KLAISGAFEN IQVAVLPERP 120 SEPSCSFYVK TGKCKFGATC KFHHPKDIQI ASSGQDNARG EQPEIVTKTG GATADVKPAL 180 FHNSKGLPIR PDEVDCPFYL KTGSCKYGSS CRYNHPDRNA FNPPAAVLGH SLVASASNLN 240 IGVVTPAASI YQTIDPRLGQ STLLAQPTFP TLGVAPTVYP QRPGQTECEY YMKTGDCKFG 300 DRCKFHHPID RSVSKTKQTS EQAVKLTLAG LPRREVIDSW DYNEGRCSLS ILHEDWNMQV 360 WCNMQI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007022804.2 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X4 | ||||
Swissprot | Q941Q3 | 1e-109 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A061FBQ0 | 0.0 | A0A061FBQ0_THECC; Floral homeotic protein isoform 4 | ||||
STRING | EOY14325 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-112 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG033706t4 |
Entrez Gene | 18595007 |
Publications ? help Back to Top | |||
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