PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG033706t3 | ||||||||
Common Name | TCM_033706 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 362aa MW: 39489.4 Da PI: 7.9947 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34 | 4.8e-11 | 110 | 134 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ Thecc1EG033706t3 110 GEKDCAHYMLTRTCKFGDSCKFDHP 134 7889********************8 PP | |||||||
2 | zf-CCCH | 34.4 | 3.7e-11 | 163 | 187 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++t Ck+G++CkF+H++ Thecc1EG033706t3 163 EPDCPYFLKTQRCKFGSKCKFNHPK 187 789********************96 PP | |||||||
3 | zf-CCCH | 34.4 | 3.8e-11 | 210 | 234 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C+f+ +tG Ck+G++CkF+H++ Thecc1EG033706t3 210 EPSCSFYVKTGKCKFGATCKFHHPK 234 577********************96 PP | |||||||
4 | zf-CCCH | 39.5 | 9.3e-13 | 280 | 304 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f+++tG CkyG++C+++H+ Thecc1EG033706t3 280 DEVDCPFYLKTGSCKYGSSCRYNHP 304 6789********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 0.0011 | 108 | 135 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.507 | 108 | 136 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-5 | 109 | 135 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.2E-9 | 110 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.1E-4 | 114 | 133 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.878 | 160 | 188 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.2E-4 | 160 | 187 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-8 | 163 | 187 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.53E-6 | 165 | 190 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-5 | 166 | 188 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.511 | 207 | 235 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.8E-5 | 207 | 234 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-6 | 210 | 234 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-8 | 210 | 234 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 213 | 233 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.9E-6 | 278 | 305 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.061 | 278 | 306 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-10 | 280 | 304 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.06E-6 | 281 | 305 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-5 | 284 | 303 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 362 aa Download sequence Send to blast |
MANQLYGYTP RYSSPSPTAS LSSTLQRYLD SETTPHSHLL HHLQPWPPGA DVPSSAGPIK 60 RPSEVLYHQN VLDAHNTIGQ TEAWYSTSSL VKRPRLESAS NLPIYPQRPG EKDCAHYMLT 120 RTCKFGDSCK FDHPIWVPEG GIPDWKEVPL ATTSESLPER AGEPDCPYFL KTQRCKFGSK 180 CKFNHPKDKL AISGAFENIQ VAVLPERPSE PSCSFYVKTG KCKFGATCKF HHPKDIQIAS 240 SGQDNARGEQ PEIVTKTGGA TADVKPALFH NSKGLPIRPD EVDCPFYLKT GSCKYGSSCR 300 YNHPDRNAFN PPAAVLGHSL VASASNLNIG VVTPAASIYQ TIDPRLAGSG SNCVSSETWT 360 D* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 2e-78 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 2e-78 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007022800.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Swissprot | Q941Q3 | 1e-140 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A061FC85 | 0.0 | A0A061FC85_THECC; Floral homeotic protein isoform 3 | ||||
STRING | EOY14325 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-141 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG033706t3 |
Entrez Gene | 18595007 |
Publications ? help Back to Top | |||
---|---|---|---|
|