PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG033645t1

Common Name

TCM_033645

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB

Protein Properties

Length: 338aa MW: 37864.8 Da PI: 6.2399

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG033645t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54	3.7e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEd++l++ ++ +G g+W+++++ g+ R++k+c++rw +yl Thecc1EG033645t1 13 RGLWSPEEDDKLIKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 788*******************************************97 PP
2	Myb_DNA-binding	54.7	2.3e-17	66	109	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+++++d+++ lG++ W+ Ia++++ gRt++++k++w++ Thecc1EG033645t1 66 RGSFTADEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109 89******************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-26	5	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.715	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	3.15E-29	10	107	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-12	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-15	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	1.42E-10	16	60	No hit	No description
PROSITE profile	PS51294	26.638	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-25	64	115	IPR009057	Homeodomain-like
SMART	SM00717	3.0E-16	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-15	66	109	IPR001005	SANT/Myb domain
CDD	cd00167	3.80E-12	68	108	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MGHRCCSKQK VKRGLWSPEE DDKLIKHITA HGHGSWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLKRGSFT ADEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLLSQGL 120 DPKTHNLLSS RQRASNKLAC HSSSQTQEQS FTVFNMSSQN RDAPRAMMKA PVLTLPEPPP 180 PSDQIHRSMA MQIPYSECQS PNFVGTGYGQ NPNESAIFSY GLSVESTIIS SSSSSIPLPG 240 FNNLLDENPC IWEANAFVET FEAPTVEGLQ PQEQPQQEKE KICEMVIDKI DEAREEVLEM 300 DASFDSCSFD LGLLESTLIS AAMCRDLSSM DDFAWNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-31	13	115	7	108	B-MYB
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00350	DAP	Transfer from AT3G12720	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007022775.2	0.0	PREDICTED: transcription factor MYB26
TrEMBL	A0A061FAD3	0.0	A0A061FAD3_THECC; Myb domain protein 67, putative
STRING	EOY14300	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7955	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12720.1	5e-86	myb domain protein 67

Link Out ? help Back to Top
Phytozome	Thecc1EG033645t1
Entrez Gene	18594987

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]