PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG033629t1

Common Name

TCM_033629

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 334aa MW: 38023.4 Da PI: 4.6895

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG033629t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.8	1.7e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeelv +yL +k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyf+s+rdkky++g+r+nrat++gyWkatgkd++ Thecc1EG033629t1 6 LPPGFRFHPTDEELVAYYLDRKISGRTIEL-EIIPEVDLYKCEPWDLPdKsFLPSKDMEWYFYSPRDKKYPNGSRTNRATRAGYWKATGKDRA 97 79**************************.99**********96435566888******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s ++++vg+kktLv+y+grap+g +t+Wvmheyrl Thecc1EG033629t1 98 VHS-QKRAVGMKKTLVYYRGRAPHGIRTNWVMHEYRL 133 .9999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-64	3	158	IPR003441	NAC domain
PROSITE profile	PS51005	61.025	6	158	IPR003441	NAC domain
Pfam	PF02365	4.6E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MAPMSLPPGF RFHPTDEELV AYYLDRKISG RTIELEIIPE VDLYKCEPWD LPDKSFLPSK 60 DMEWYFYSPR DKKYPNGSRT NRATRAGYWK ATGKDRAVHS QKRAVGMKKT LVYYRGRAPH 120 GIRTNWVMHE YRLVESSSAT APASSLKDSY ALCRIFKKTI QIPNKTKEAV ENNINAEKEV 180 GWVSDEQLFG DDASGTEISR RRDAEDENFN TSSSDVTQGT PNETGMADDY HQAPFTSDEA 240 NSSANMCSLP ADFSSNLFQE MQMPGYTSLH YQVPYPPLEL EDFPQIDISE TKPEIIDEYM 300 IYDKYRGCMN GSLEEIFSLC SSQDNSMPLS MQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-59	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-59	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-59	1	158	12	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-59	1	158	12	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-59	1	158	15	168	NAC domain-containing protein 19
3swm_B	1e-59	1	158	15	168	NAC domain-containing protein 19
3swm_C	1e-59	1	158	15	168	NAC domain-containing protein 19
3swm_D	1e-59	1	158	15	168	NAC domain-containing protein 19
3swp_A	1e-59	1	158	15	168	NAC domain-containing protein 19
3swp_B	1e-59	1	158	15	168	NAC domain-containing protein 19
3swp_C	1e-59	1	158	15	168	NAC domain-containing protein 19
3swp_D	1e-59	1	158	15	168	NAC domain-containing protein 19
4dul_A	1e-59	1	158	12	165	NAC domain-containing protein 19
4dul_B	1e-59	1	158	12	165	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017980051.1	0.0	PREDICTED: NAC domain-containing protein 45
TrEMBL	A0A061FB92	0.0	A0A061FB92_THECC; NAC domain containing protein 20
STRING	EOY14296	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8123	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	1e-110	NAC domain containing protein 20

Link Out ? help Back to Top
Phytozome	Thecc1EG033629t1
Entrez Gene	18594983

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]