PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thecc1EG033560t1 | ||||||||
Common Name | TCM_033560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 532aa MW: 59641.5 Da PI: 8.4443 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.3e-17 | 239 | 284 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia++++ gRt+k+c++rw++ Thecc1EG033560t1 239 RGHWKPAEDSKLKELVALYGPQNWNLIAEKLQ-GRTGKSCRLRWFNQ 284 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 291 | 334 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++++eE+e+l a+k +G++ W+ Iar ++ gRt++ +k+ w+ Thecc1EG033560t1 291 KKAFSEEEEERLMTAHKAYGNK-WAMIARLFP-GRTDNAVKNQWHV 334 679*******************.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.665 | 234 | 289 | IPR017930 | Myb domain |
SMART | SM00717 | 1.1E-14 | 238 | 287 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.36E-28 | 239 | 332 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-16 | 239 | 284 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-26 | 240 | 292 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.74E-13 | 242 | 283 | No hit | No description |
SMART | SM00717 | 1.4E-13 | 290 | 338 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.445 | 290 | 340 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.6E-12 | 291 | 333 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.71E-10 | 293 | 333 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-20 | 293 | 339 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 532 aa Download sequence Send to blast |
MSFHRNSQTR GPVSVREVKL PQPKMSSRVD FLLERKQKLF FFLLLLTSTG LSISHFYLFI 60 LCSSLSLACF LCKYLSLLLF VFICTFFLPF WDMKMTVQQF HNSSCCHQEN NGLSNCYSIY 120 SPSSSSMEVL KHMDSLSITP THHVYSSQNI CYCGDNIPVK GHMGISYVIN CPCSLEEDAR 180 NCEVGDHFSK GSESIDEFGE NNAAVSMEDI RRRICMNEGN PGDCFLSGKD VGQSKVCARG 240 HWKPAEDSKL KELVALYGPQ NWNLIAEKLQ GRTGKSCRLR WFNQLDPRIN KKAFSEEEEE 300 RLMTAHKAYG NKWAMIARLF PGRTDNAVKN QWHVIMARKY REQASAYRRR KLSQAIQRKM 360 EENGNLNCRE AANGNNTNSP KNPSVGSNGS YNKTSRKGAA TCVRDLFLGS KSHNSFSPGE 420 GACRNQTPLD FFSDYIRPES FRWNSRQCNM LHDETTLTVS HPYSHPSQML MQQSSNHQLS 480 GFSDSIASAP QVTVTETSSS SPTAAEKAAA SHLETTASPP PFIDFLGVGA S* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-33 | 239 | 339 | 7 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_017974420.1 | 0.0 | PREDICTED: transcription factor MYB35 isoform X1 | ||||
TrEMBL | A0A061FAA0 | 0.0 | A0A061FAA0_THECC; Myb domain protein 105, putative | ||||
STRING | EOY14255 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1210 | 28 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26780.1 | 5e-71 | myb domain protein 117 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thecc1EG033560t1 |
Entrez Gene | 18594955 |
Publications ? help Back to Top | |||
---|---|---|---|
|