PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG033457t1 | ||||||||
Common Name | TCM_033457 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | GeBP | ||||||||
Protein Properties | Length: 188aa MW: 21812.2 Da PI: 10.2441 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 93.2 | 2.9e-29 | 39 | 130 | 2 | 98 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 fqr+++e+De+++L +++++ k+ ++ps+di++fy+f+ ksi+++v+k ql +Ki+rLKkKf+k+ k + +f ++h qkif ls+ Thecc1EG033457t1 39 PFQRVFNEDDEVAVLEAILEYSIKKVTNPSADINGFYDFIMKSIHVNVTKAQLKDKIKRLKKKFRKNAKG-----NRTFLHSHAQKIFYLSNT 126 59****************************************************************9999.....789*************** PP DUF573 95 iWgs 98 iWg+ Thecc1EG033457t1 127 IWGQ 130 **96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 3.4E-25 | 40 | 129 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MTTTTIHANC SSDSNEVKCP KRKASAVVET YREDEKKSPF QRVFNEDDEV AVLEAILEYS 60 IKKVTNPSAD INGFYDFIMK SIHVNVTKAQ LKDKIKRLKK KFRKNAKGNR TFLHSHAQKI 120 FYLSNTIWGQ EVKGKEAMEV DMGESRATSE QKWRKLEIAE LEVFLQRKKL IVEQAKLMLK 180 RLKYEHK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 103 | KRLKKKFRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021299423.1 | 1e-109 | probable transcription factor At4g00390 | ||||
TrEMBL | A0A061FBD5 | 1e-135 | A0A061FBD5_THECC; Uncharacterized protein | ||||
STRING | EOY14183 | 1e-136 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM313 | 28 | 181 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G61730.1 | 3e-12 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG033457t1 |
Entrez Gene | 18594901 |
Publications ? help Back to Top | |||
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