PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG033437t1
Common NameTCM_033437
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NF-YC
Protein Properties Length: 276aa    MW: 31010.9 Da    PI: 6.5082
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG033437t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.75.4e-56931971102
             NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa++rtd+fd
  Thecc1EG033437t1  93 QLQMFWANQmqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFD 185
                       89******988889******************************************************************************* PP

             NF-YC  91 flvdivprdelk 102
                       flvdi+prdelk
  Thecc1EG033437t1 186 FLVDIIPRDELK 197
                       *********975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.45E-3472187IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.0E-37107179IPR009072Histone-fold
PfamPF008082.5E-21115178IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MDQSEQTQQQ HQHQQQHQQH QQQPVMGVVP GAGQMGYSTG PYHTASMVAS GTPAVAVPSP  60
TQPPTTFSSS PHQLAYQQAQ HFHHQQQQQQ QQQLQMFWAN QMQEIEQTTD FKNHSLPLAR  120
IKKIMKADED VRMISAEAPV IFAKACEMFI LELTLRSWIH TEENKRRTLQ KNDIAAAISR  180
TDVFDFLVDI IPRDELKEEG LGVTKATIPL VGSPADIPYY YVPQHPVGPT GMIMGKPVDQ  240
ATLYPGQQAR PPMAFMPWPQ GQPQQQQSQQ QQSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-59101193395NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007022623.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_007022624.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_007022626.10.0PREDICTED: nuclear transcription factor Y subunit C-2
RefseqXP_017980698.10.0PREDICTED: nuclear transcription factor Y subunit C-2
SwissprotQ655V51e-81NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A061FB940.0A0A061FB94_THECC; Nuclear transcription factor Y subunit C-2 isoform 1
STRINGEOY141510.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM47828160
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-82nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]