PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG033386t1

Common Name

TCM_033386

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 282aa MW: 31753.1 Da PI: 5.3859

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG033386t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.5	2.8e-09	164	207	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ r RR++i ++ +eL +l+P + K++ ae+L A +YIk+Lq Thecc1EG033386t1 164 IAARERRRKITEKTQELGKLVPGgN------KMNTAEMLHAAFKYIKYLQ 207 56799***************955......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.11E-8	149	210	No hit	No description
PROSITE profile	PS50888	12.716	157	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-12	161	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-11	162	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-10	163	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-7	165	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MVLSSYSNWG TDLQNVHSEP IHYAKQPPAQ LVAGDHHLEY YWDTFELPCA FLDPYIDLNE 60 NFLYPENYNA LLPYLSSPYD PLSSFSPENE IIPYENFSSY PCPKRQKLIE GHCCSDFVPA 120 FSDGVALNSC PVPEHQSIHQ KNLDGNSVES SKRINAKSVS VQSIAARERR RKITEKTQEL 180 GKLVPGGNKM NTAEMLHAAF KYIKYLQAQV GILEFMDSFS EKEKATRKES MQIVTSPKVQ 240 EKLSMEEKCL VPKDVVLSLT TLSKPPLSDE LSQLLAFAPL E*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017980117.1	0.0	PREDICTED: transcription factor bHLH53
TrEMBL	A0A061F9U5	0.0	A0A061F9U5_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOY14120	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16954	4	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	7e-26	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG033386t1
Entrez Gene	18594870

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]