PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG032927t2

Common Name

TCM_032927

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB_related

Protein Properties

Length: 338aa MW: 37991.8 Da PI: 4.7084

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG032927t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.5e-15	31	77	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l Thecc1EG032927t2 31 RGNFTREEEDTIIRLHEGLGNKWWSKIASHLP-GRTDNEIKNVWNTHL 77 89****************************.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-12	1	36	IPR009057	Homeodomain-like
PROSITE profile	PS51294	7.268	1	25	IPR017930	Myb domain
SuperFamily	SSF46689	1.67E-20	12	83	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.466	26	81	IPR017930	Myb domain
SMART	SM00717	4.2E-12	30	79	IPR001005	SANT/Myb domain
Pfam	PF00249	9.7E-14	31	77	IPR001005	SANT/Myb domain
CDD	cd00167	5.57E-10	33	77	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.1E-21	37	81	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
WRALPKQAGL LRCGKSCRLR WINYLRPDVK RGNFTREEED TIIRLHEGLG NKWWSKIASH 60 LPGRTDNEIK NVWNTHLKRR LASKNGNILQ TDESKESSMT SSSSCSSITF VSSSSGKRNL 120 EIDIEHQWDE GSVNKKPREA FAMSVSDKAQ DFKTELSNHS SPFEEPKELS SSSISSYNSN 180 ITNSSQIDVS NPENQAGSLF NFAGLYDANN ASEEVNKPEI LDTAFDIPLE SDLDFWDMLD 240 NLGSFQSDGI QLHEMEGNQS SNFGEGYIKE AVNKKWLHDL ENELGLEVTR DENQNDLSNN 300 AAEPLVPEMY DMLLKPEADM GMGHYHAWSS SQHSPAI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-16	12	81	40	108	B-MYB
1mse_C	2e-16	12	81	37	105	C-Myb DNA-Binding Domain
1msf_C	2e-16	12	81	37	105	C-Myb DNA-Binding Domain
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007022447.2	0.0	PREDICTED: myb-related protein Myb4
TrEMBL	A0A061FAN7	0.0	A0A061FAN7_THECC; Myb domain protein 58 isoform 2 (Fragment)
STRING	EOY13972	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16490.1	6e-47	myb domain protein 58

Link Out ? help Back to Top
Phytozome	Thecc1EG032927t2
Entrez Gene	18594753

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]