PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG032927t1 | ||||||||
Common Name | TCM_032927 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | MYB | ||||||||
Protein Properties | Length: 375aa MW: 42106.5 Da PI: 5.0993 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 7.1e-16 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl Thecc1EG032927t1 16 RGPWSPAEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.3 | 5.5e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l Thecc1EG032927t1 69 RGNFTREEEDTIIRLHEGLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.567 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.62E-29 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.3E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.67E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.645 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-27 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-15 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.05E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MGKGRAPCCD KNQVKRGPWS PAEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTREEEDTI IRLHEGLGNK WSKIASHLPG RTDNEIKNVW NTHLKRRLAS 120 KNGNILQTDE SKESSMTSSS SCSSITFVSS SSGKRNLEID IEHQWDEGSV NKKPREAFAM 180 SVSDKAQDFK TELSNHSSPF EEPKELSSSS ISSYNSNITN SSQIDVSNPE NQAGSLFNFA 240 GLYDANNASE EVNKPEILDT AFDIPLESDL DFWDMLDNLG SFQSDGIQLH EMEGNQSSNF 300 GEGYIKEAVN KKWLHDLENE LGLEVTRDEN QNDLSNNAAE PLVPEMYDML LKPEADMGMG 360 HYHAWSSSQH SPAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 3e-26 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-26 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ566596 | 3e-71 | AJ566596.1 Theobroma cacao microsatellite, clone mTcCIR277. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007022447.2 | 0.0 | PREDICTED: myb-related protein Myb4 | ||||
TrEMBL | A0A061FB53 | 0.0 | A0A061FB53_THECC; Myb domain protein 58 isoform 1 | ||||
STRING | EOY13972 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 7e-75 | myb domain protein 63 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG032927t1 |
Entrez Gene | 18594753 |
Publications ? help Back to Top | |||
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