PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG032927t1
Common NameTCM_032927
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 375aa    MW: 42106.5 Da    PI: 5.0993
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG032927t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding507.1e-161663148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
  Thecc1EG032927t1 16 RGPWSPAEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63
                      89******************************99************97 PP

2Myb_DNA-binding50.35.5e-1669114148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg++T eE++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  Thecc1EG032927t1  69 RGNFTREEEDTIIRLHEGLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114
                       89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-23766IPR009057Homeodomain-like
PROSITE profilePS5129414.5671163IPR017930Myb domain
SuperFamilySSF466895.62E-2914110IPR009057Homeodomain-like
SMARTSM007171.3E-121565IPR001005SANT/Myb domain
PfamPF002499.3E-151663IPR001005SANT/Myb domain
CDDcd001673.67E-91863No hitNo description
PROSITE profilePS5129425.64564118IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.2E-2767118IPR009057Homeodomain-like
SMARTSM007171.2E-1468116IPR001005SANT/Myb domain
PfamPF002499.6E-1569114IPR001005SANT/Myb domain
CDDcd001676.05E-1071114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGKGRAPCCD KNQVKRGPWS PAEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTREEEDTI IRLHEGLGNK WSKIASHLPG RTDNEIKNVW NTHLKRRLAS  120
KNGNILQTDE SKESSMTSSS SCSSITFVSS SSGKRNLEID IEHQWDEGSV NKKPREAFAM  180
SVSDKAQDFK TELSNHSSPF EEPKELSSSS ISSYNSNITN SSQIDVSNPE NQAGSLFNFA  240
GLYDANNASE EVNKPEILDT AFDIPLESDL DFWDMLDNLG SFQSDGIQLH EMEGNQSSNF  300
GEGYIKEAVN KKWLHDLENE LGLEVTRDEN QNDLSNNAAE PLVPEMYDML LKPEADMGMG  360
HYHAWSSSQH SPAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-26161184105C-Myb DNA-Binding Domain
1msf_C3e-26161184105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5665963e-71AJ566596.1 Theobroma cacao microsatellite, clone mTcCIR277.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007022447.20.0PREDICTED: myb-related protein Myb4
TrEMBLA0A061FB530.0A0A061FB53_THECC; Myb domain protein 58 isoform 1
STRINGEOY139720.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.17e-75myb domain protein 63
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]