PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG032479t2
Common NameTCM_032479
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 299aa    MW: 33767.5 Da    PI: 7.7103
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG032479t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.11.6e-53111351129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       lppGfrFhP+deelv++yL +kv++++  l + + evd++k+ePwd+p++v  + kewyf+s+rd+kyatg r+nrat+sgyWkatgkd++vl
  Thecc1EG032479t2  11 LPPGFRFHPRDEELVCDYLMRKVATSTDAL-QLMIEVDLNKCEPWDIPARV--GGKEWYFYSQRDRKYATGLRTNRATASGYWKATGKDRAVL 100
                       79************************9777.8899*************665..789************************************* PP

               NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
                       s kg+lvg++ktLvfy+grapkg+ktdWvmhe+rle
  Thecc1EG032479t2 101 S-KGTLVGMRKTLVFYQGRAPKGRKTDWVMHEFRLE 135
                       *.999****************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-602159IPR003441NAC domain
PROSITE profilePS5100557.08211158IPR003441NAC domain
PfamPF023651.9E-2712134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MSNISLVEAK LPPGFRFHPR DEELVCDYLM RKVATSTDAL QLMIEVDLNK CEPWDIPARV  60
GGKEWYFYSQ RDRKYATGLR TNRATASGYW KATGKDRAVL SKGTLVGMRK TLVFYQGRAP  120
KGRKTDWVMH EFRLEGPLAP PKLSTLKEDW VLCRVFHKNT EITAKPRSMG SCYDDTGSSP  180
LPPLMDSYIT FDQSEPNLDE YKQVPCFSTF SQSQTNPFFT NTTYMEPSLP AKTQPALGQI  240
PMNACLDSFP CDQKVIKAVL NHLTKLDSYL NVKESPSFGE GCSESYLSEV GMPDIWNH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-53616012167NO APICAL MERISTEM PROTEIN
1ut4_B1e-53616012167NO APICAL MERISTEM PROTEIN
1ut7_A1e-53616012167NO APICAL MERISTEM PROTEIN
1ut7_B1e-53616012167NO APICAL MERISTEM PROTEIN
4dul_A1e-53616012167NAC domain-containing protein 19
4dul_B1e-53616012167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007022298.10.0PREDICTED: NAC domain-containing protein 21/22
SwissprotQ84TE61e-124NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A061FH840.0A0A061FH84_THECC; NAC domain-containing protein 21/22 isoform 2
STRINGEOY138230.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.21e-126NAC domain containing protein 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  5. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  6. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  7. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]