PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG032393t1 | ||||||||
Common Name | TCM_032393 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 344aa MW: 38688.7 Da PI: 8.3496 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 159.2 | 1.7e-49 | 69 | 196 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 pGfrFhPtdeel+++yL++kv++k++++ e ik++diyk++PwdLpk +++e++ yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s+ Thecc1EG032393t1 69 PGFRFHPTDEELLSFYLQRKVDKKPIKI-ELIKQMDIYKCDPWDLPKPSSEGESDSYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSH 160 9***************************.89***************8777888999************************************9 PP NAM 96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLv+y+g+a kg+ktdW+mhe+rl Thecc1EG032393t1 161 ggeGHVCIGLKKTLVYYRGSAGKGTKTDWMMHEFRL 196 5544445***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-54 | 63 | 225 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.159 | 67 | 225 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-24 | 69 | 196 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MPFIGFGNDM ICFGDGPCVF FHPEGSPKLK LQTIKLFVSY TAPGIFQGHK GKMNVQDGTA 60 KMDEDVPLPG FRFHPTDEEL LSFYLQRKVD KKPIKIELIK QMDIYKCDPW DLPKPSSEGE 120 SDSYFFCKRG RKYRNSIRPN RVTGSGFWKA TGIDKPVYSH GGEGHVCIGL KKTLVYYRGS 180 AGKGTKTDWM MHEFRLPSND NNTSLSDPQY AQEAEVWTIC RIFKRNASHR KLYTPDWREV 240 AAKRHSTNRT SSQTFTVESN NVENYISFGD PILQHQAVNQ INGRSQWHAA AAAAAADQLS 300 TTAQPLLIAP SSSFSNPETD LVTYANWDEL RSVVEFALDP SLL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-47 | 53 | 231 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-47 | 53 | 231 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-47 | 53 | 231 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-47 | 53 | 231 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-47 | 53 | 231 | 7 | 174 | NAC domain-containing protein 19 |
3swm_B | 9e-47 | 53 | 231 | 7 | 174 | NAC domain-containing protein 19 |
3swm_C | 9e-47 | 53 | 231 | 7 | 174 | NAC domain-containing protein 19 |
3swm_D | 9e-47 | 53 | 231 | 7 | 174 | NAC domain-containing protein 19 |
3swp_A | 9e-47 | 53 | 231 | 7 | 174 | NAC domain-containing protein 19 |
3swp_B | 9e-47 | 53 | 231 | 7 | 174 | NAC domain-containing protein 19 |
3swp_C | 9e-47 | 53 | 231 | 7 | 174 | NAC domain-containing protein 19 |
3swp_D | 9e-47 | 53 | 231 | 7 | 174 | NAC domain-containing protein 19 |
4dul_A | 9e-47 | 53 | 231 | 4 | 171 | NAC domain-containing protein 19 |
4dul_B | 9e-47 | 53 | 231 | 4 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00353 | DAP | Transfer from AT3G12910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017980098.1 | 0.0 | PREDICTED: transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 3e-84 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A061F8U3 | 0.0 | A0A061F8U3_THECC; NAC domain transcriptional regulator superfamily protein, putative | ||||
STRING | EOY13745 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM306 | 28 | 200 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12910.1 | 4e-91 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG032393t1 |
Entrez Gene | 18594563 |