PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG032181t4 | ||||||||
Common Name | TCM_032181 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | STAT | ||||||||
Protein Properties | Length: 582aa MW: 65047.4 Da PI: 5.9791 | ||||||||
Description | STAT family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | STAT | 180.5 | 2.4e-56 | 79 | 200 | 1 | 122 |
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 ldvvllna+gqpv+k++evvasLlya + ++vek++d+eapLL+sydG+ef+s+drp+kll+Grasfklkis+Lssk++nr f+ikf i k++ Thecc1EG032181t4 79 LDVVLLNAFGQPVNKELEVVASLLYAHNRSPVEKTNDEEAPLLASYDGIEFASSDRPSKLLNGRASFKLKISKLSSKSENRQFCIKFGISKFE 171 8******************************************************************************************** PP STAT 94 kypfleavskpirCisrsrntrsssltkk 122 y+fle +s +irC+sr+r+ r+s+ ++k Thecc1EG032181t4 172 GYRFLEDFSPSIRCVSRNRTPRTSTIIWK 200 ***********************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10338 | 6.09E-57 | 454 | 560 | No hit | No description |
Gene3D | G3DSA:3.30.505.10 | 4.8E-6 | 458 | 526 | IPR000980 | SH2 domain |
SuperFamily | SSF55550 | 6.01E-8 | 460 | 526 | IPR000980 | SH2 domain |
PROSITE profile | PS50001 | 9.589 | 465 | 549 | IPR000980 | SH2 domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 582 aa Download sequence Send to blast |
MPNDLRKTTV VGITGGNDLQ GYIHDAKVLP STLSIKNQYV QNPPLQLSID ESSASDIEED 60 NGFWNIVGGK ASCRRIFSLD VVLLNAFGQP VNKELEVVAS LLYAHNRSPV EKTNDEEAPL 120 LASYDGIEFA SSDRPSKLLN GRASFKLKIS KLSSKSENRQ FCIKFGISKF EGYRFLEDFS 180 PSIRCVSRNR TPRTSTIIWK KTTAVHPLNG SQSFGLDDAS LEPRHNTVDE AKLSPTSKRV 240 RSGEAKISTI DQLGEECNSL AWTANQVENG YGSSMEARPE NFEEVDNSLS DSESTGARDS 300 ALKSVSNTAH SVSDLTIFRY CLGGLTDRSL LLKEIATNAS DEEISGFANQ VSLYSGCSHH 360 RHQIKITKRL IEEGTKAWNL LSQNNIQVQW ESAVFEIEEQ FMKIAHCSTR SLTQQDFELL 420 RKIAGCRDYM AQENFEKMWC WLYPVAFTLS SDWINAMWNC TSPKWIEGFI TKEEAELSLQ 480 GPRGLQEPGT FILRFPTSRS WPHPDAGSLI VTYVGSDYTL HHRLLSLDNV CSPGVREMNA 540 KVKPLQDMLL AEPELSRLGR CQIGEEKLFL TSIFLVRLIT C* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007022054.2 | 0.0 | PREDICTED: uncharacterized protein LOC18594437 isoform X2 | ||||
Swissprot | Q56XZ1 | 0.0 | SHB_ARATH; SH2 domain-containing protein B | ||||
TrEMBL | A0A061FA40 | 0.0 | A0A061FA40_THECC; SH2 domain protein A, putative isoform 4 | ||||
STRING | EOY13581 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78540.1 | 0.0 | SH2 domain protein B |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG032181t4 |
Entrez Gene | 18594437 |
Publications ? help Back to Top | |||
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