PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG032181t3

Common Name

TCM_032181

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

STAT

Protein Properties

Length: 720aa MW: 80990.6 Da PI: 5.3694

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG032181t3	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	180	3.3e-56	262	383	1	122
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 ldvvllna+gqpv+k++evvasLlya + ++vek++d+eapLL+sydG+ef+s+drp+kll+Grasfklkis+Lssk++nr f+ikf i k++ Thecc1EG032181t3 262 LDVVLLNAFGQPVNKELEVVASLLYAHNRSPVEKTNDEEAPLLASYDGIEFASSDRPSKLLNGRASFKLKISKLSSKSENRQFCIKFGISKFE 354 8****************************************************************************************** PP STAT 94 kypfleavskpirCisrsrntrsssltkk 122 y+fle +s +irC+sr+r+ r+s+ ++k Thecc1EG032181t3 355 GYRFLEDFSPSIRCVSRNRTPRTSTIIWK 383 *********************999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.505.10	7.5E-6	641	708	IPR000980	SH2 domain
SuperFamily	SSF55550	9.27E-8	642	712	IPR000980	SH2 domain
PROSITE profile	PS50001	9.678	648	720	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
PTSIIEQPVR QNNCLPLLLL LYKETEKFSG FFFVQRKGKT MGENNQIIEE KDYILLKDFK 60 VEIEVEEGKG FILCFWVYMF NPNAFPATIL KQVYSETNSS APLLVLNEKT LMLLPLTCLH 120 NEVPDPGNTA LSTEVLKVST QIEYPQYKWI HVAYEVSTDF VRLHINAEIA GELQLSSLLN 180 KVSMPNDLRK TTVVGITGGN DLQGYIHDAK VLPSTLSIKN QYVQNPPLQL SIDESSASDI 240 EEDNGFWNIV GGKASCRRIF SLDVVLLNAF GQPVNKELEV VASLLYAHNR SPVEKTNDEE 300 APLLASYDGI EFASSDRPSK LLNGRASFKL KISKLSSKSE NRQFCIKFGI SKFEGYRFLE 360 DFSPSIRCVS RNRTPRTSTI IWKKTTAVHP LNGSQSFGLD DASLEPRHNT VDEAKLSPTS 420 KRVRSGEAKI STIDQLGEEC NSLAWTANQV ENGYGSSMEA RPENFEEVDN SLSDSESTGA 480 RDSALKSVSN TAHSVSDLTI FRYCLGGLTD RSLLLKEIAT NASDEEISGF ANQVSLYSGC 540 SHHRHQIKIT KRLIEEGTKA WNLLSQNNIQ VQWESAVFEI EEQFMKIAHC STRSLTQQDF 600 ELLRKIAGCR DYMAQENFEK MWCWLYPVAF TLSSDWINAM WNCTSPKWIE GFITKEEAEL 660 SLQGPRGLQE PGTFILRFPT SRSWPHPDAG SLIVTYVGSD YTLHHRLLSL DNPWSAGNEC

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

PTSIIEQPVR QNNCLPLLLL LYKETEKFSG FFFVQRKGKT MGENNQIIEE KDYILLKDFK  60
VEIEVEEGKG FILCFWVYMF NPNAFPATIL KQVYSETNSS APLLVLNEKT LMLLPLTCLH  120
NEVPDPGNTA LSTEVLKVST QIEYPQYKWI HVAYEVSTDF VRLHINAEIA GELQLSSLLN  180
KVSMPNDLRK TTVVGITGGN DLQGYIHDAK VLPSTLSIKN QYVQNPPLQL SIDESSASDI  240
EEDNGFWNIV GGKASCRRIF SLDVVLLNAF GQPVNKELEV VASLLYAHNR SPVEKTNDEE  300
APLLASYDGI EFASSDRPSK LLNGRASFKL KISKLSSKSE NRQFCIKFGI SKFEGYRFLE  360
DFSPSIRCVS RNRTPRTSTI IWKKTTAVHP LNGSQSFGLD DASLEPRHNT VDEAKLSPTS  420
KRVRSGEAKI STIDQLGEEC NSLAWTANQV ENGYGSSMEA RPENFEEVDN SLSDSESTGA  480
RDSALKSVSN TAHSVSDLTI FRYCLGGLTD RSLLLKEIAT NASDEEISGF ANQVSLYSGC  540
SHHRHQIKIT KRLIEEGTKA WNLLSQNNIQ VQWESAVFEI EEQFMKIAHC STRSLTQQDF  600
ELLRKIAGCR DYMAQENFEK MWCWLYPVAF TLSSDWINAM WNCTSPKWIE GFITKEEAEL  660
SLQGPRGLQE PGTFILRFPT SRSWPHPDAG SLIVTYVGSD YTLHHRLLSL DNPWSAGNEC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017980338.1	0.0	PREDICTED: uncharacterized protein LOC18594437 isoform X3
Swissprot	Q56XZ1	0.0	SHB_ARATH; SH2 domain-containing protein B
TrEMBL	A0A061F973	0.0	A0A061F973_THECC; SH2 domain protein A, putative isoform 3 (Fragment)
STRING	EOY13581	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5205	26	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	0.0	SH2 domain protein B

Link Out ? help Back to Top
Phytozome	Thecc1EG032181t3
Entrez Gene	18594437

Publications ? help Back to Top
Yamada Y,Wang HY,Fukuzawa M,Barton GJ,Williams JG A new family of transcription factors. Development, 2008. 135(18): p. 3093-101 [PMID:18701541] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]