PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG032112t1
Common NameTCM_032112
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family DBB
Protein Properties Length: 297aa    MW: 31686.2 Da    PI: 6.0819
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG032112t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.61.9e-06447542
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                       C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  Thecc1EG032112t1  4 QCNVCEAAEAKVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47
                      7******99*********************66899999999986 PP
2zf-B_box25.92e-085494337
          zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                      ++kC+ ++e    +fC +++ llC++C l++H        H
  Thecc1EG032112t1 54 MPKCDICQETSGFFFCLQDRALLCRKCDLAIHTAntyvsgH 94
                      799******99*********************654455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.765147IPR000315B-box-type zinc finger
CDDcd000212.10E-8347No hitNo description
SMARTSM003361.8E-10447IPR000315B-box-type zinc finger
SMARTSM003361.2E-155299IPR000315B-box-type zinc finger
PROSITE profilePS501199.0015299IPR000315B-box-type zinc finger
PfamPF006433.7E-65495IPR000315B-box-type zinc finger
CDDcd000211.33E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKIQCNVCEA AEAKVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSSS SSHMPKCDIC  60
QETSGFFFCL QDRALLCRKC DLAIHTANTY VSGHQRFLLT GVKVGPETTD PGASSSNVQS  120
PSNEKTSEAK SNSTSRRGTP MALTGGQNEV LLANAGVGNS VPTQVLYAGG SAAGSIQSWQ  180
MDDLFGLTDF NQSYGYMDNV SSKADSGRRG DSDSSSILRS AEEEVDDDEC LGQVPESSCA  240
VPQVPSPPTA SGLYWPKDSH NQSDGVVFVP DICSSIVKNP FHSRCHGSRP KRQRQI*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017980396.10.0PREDICTED: B-box zinc finger protein 22
SwissprotQ9SYM21e-99BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A061F8Y40.0A0A061F8Y4_THECC; Light-regulated zinc finger protein 1, putative isoform 1
STRINGEOY135060.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.17e-98light-regulated zinc finger protein 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]