PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG031704t2

Common Name

TCM_031704

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NZZ/SPL

Protein Properties

Length: 337aa MW: 36109.4 Da PI: 9.0154

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG031704t2	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	20.3	8.7e-07	22	67	44	87
NOZZLE 44 grkpgsktaqqkqkkptlrgmgvaklerfiieeekkkl..vvatvg 87 g g + +qk kk rg+gva+le+ ++ee++kk v+a+ g Thecc1EG031704t2 22 GNSVGRSSKKQKPKKVPQRGLGVAQLEKIRLEEQQKKDaaVAAAAG 67 55667778899999999***************99887643444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	7.8E-5	23	68	IPR014855	Plant transcription factor NOZZLE

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MAQEDQSQRC SNSNTSSGGG FGNSVGRSSK KQKPKKVPQR GLGVAQLEKI RLEEQQKKDA 60 AVAAAAGILP SPSSSVISQP THHKSSSYLS LPIPSNFHPS NQSSYSSSSS SIPFPADLSP 120 PNLIFRPPLS VQNADVVSAN TVPLTTGSSP GWHPGAGVVL PGNGSVNSGH KLWSSREYSI 180 EKECSGLDPG LAFRTNLSLP YESEPIWPPP SLMQRAQPFQ QPSSSMVNLS SRTSSTSVLN 240 YQMEPPSNQS YYGNCTPLLP EEEKMVGMKR SYPFSLDNAP GPPLHGKYPP IVHPINGHVE 300 AASSSNGSTF NFEPGTPNFR FDLNFFHLLY VMKIGV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007021650.2	0.0	PREDICTED: uncharacterized protein LOC18594125 isoform X1
TrEMBL	A0A061F841	0.0	A0A061F841_THECC; Actin cytoskeleton-regulatory complex protein pan1, putative isoform 2
STRING	EOY13175	0.0	(Theobroma cacao)

Link Out ? help Back to Top
Phytozome	Thecc1EG031704t2
Entrez Gene	18594125

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]