PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG031595t2 | ||||||||
Common Name | TCM_031595 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | SBP | ||||||||
Protein Properties | Length: 259aa MW: 28941.5 Da PI: 8.1615 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 137.9 | 2.9e-43 | 113 | 189 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqve+C dls+ak+yhrrhkvCe+h+kap v+v+gl+qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk++a Thecc1EG031595t2 113 CQVEKCGLDLSDAKRYHRRHKVCEIHAKAPFVVVAGLRQRFCQQCSRFHELSEFDEAKRSCRRRLAGHNERRRKSSA 189 **************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.6E-36 | 106 | 174 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 33.154 | 110 | 187 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.88E-40 | 111 | 190 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 3.3E-33 | 113 | 186 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
LVVLNFFFST FFFSFSLFSF ISSESHKLSS QHFITSPLYI SPSPAMETTD FRRKSALKTK 60 MNKGFIAEDL DDDMEEEEEE GVGDHGFPDD EKKKKAYGKR GSSGGAGVSP PSCQVEKCGL 120 DLSDAKRYHR RHKVCEIHAK APFVVVAGLR QRFCQQCSRF HELSEFDEAK RSCRRRLAGH 180 NERRRKSSAE SSTEGSSRKG MSSQLRESQC RQADDQRARV PILHAPSLLS ANGLCISLCT 240 GTYYTTLEDS ITISGIEI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-37 | 101 | 186 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00359 | DAP | Transfer from AT3G15270 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ622313 | 1e-133 | KJ622313.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017980011.1 | 1e-161 | PREDICTED: squamosa promoter-binding-like protein 4 | ||||
TrEMBL | A0A061FF19 | 0.0 | A0A061FF19_THECC; Squamosa promoter binding protein-like 3 isoform 2 (Fragment) | ||||
STRING | EOY13069 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM868 | 28 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15270.1 | 6e-41 | squamosa promoter binding protein-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG031595t2 |
Entrez Gene | 18594039 |
Publications ? help Back to Top | |||
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