PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG031427t1

Common Name

TCM_031427

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

C3H

Protein Properties

Length: 323aa MW: 36320.2 Da PI: 8.4005

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG031427t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.7	2.7e-10	273	295	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C+++ tG+C yGd+CkF H+ Thecc1EG031427t1 273 DICKDYKSTGYCGYGDSCKFVHD 295 69********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05617	1.7E-7	33	91	IPR008502	Prolamin-like domain
SuperFamily	SSF90229	5.63E-9	268	300	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.652	269	297	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.2E-6	269	296	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.0E-11	270	300	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.3E-8	272	295	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MASFNVYVVF GVLVIMASRA VMARDVDPIK AKNCETKMTL HCVIEVLTSI FKIGIVTDNC 60 CVELIGLGQF CHDALIKKTL QNPLFKNNDI SMILSRDSSE PQYPGKEPQQ SETEPQQSEV 120 CNFFRKPTRG KNIRKRTINE DEDEGSRDET SLLHIHKKTV KPDNKLHFST GPSKSAAATE 180 STIESGKPVF LFESSKEIQV QNDSRATATL ETETELTKDA RATCEKVFKG MHGYVDGFRR 240 EQTVAIGKAG RSHGPRRDLA HIRVSARFDY QADICKDYKS TGYCGYGDSC KFVHDRGDYK 300 SGWQLEKEWK AEDKARKRAY VI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5z56_M	2e-24	203	308	113	235	RING finger protein 113A
5z58_M	2e-24	203	308	113	235	RING finger protein 113A
6ff4_t	2e-24	203	308	113	235	RING finger protein 113A
6ff7_t	2e-24	203	308	113	235	RING finger protein 113A
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017974161.1	1e-121	PREDICTED: zinc finger CCCH domain-containing protein 1
Swissprot	Q8GX84	2e-90	C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBL	A0A061F796	0.0	A0A061F796_THECC; Zinc finger (CCCH-type/C3HC4-type RING finger) family protein, putative
STRING	EOY12926	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01350.1	1e-80	C3H family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG031427t1
Entrez Gene	18593914

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]