PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG031364t2 | ||||||||
Common Name | TCM_031364 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | NAC | ||||||||
Protein Properties | Length: 354aa MW: 39175.3 Da PI: 9.4664 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 101.4 | 1.3e-31 | 75 | 149 | 53 | 128 |
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl Thecc1EG031364t2 75 FGEKEWYFFSPRDRKYPNGSRPNRVAGTGYWKATGTDKVITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 149 4789************************************99.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 38.843 | 19 | 172 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.32E-43 | 52 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.7E-15 | 78 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MKSFWCSICA GKLLGIIFLY KSLEKSICTS LILGFYQVSS SIPTKGSTFL LLYFPCLKIV 60 FADQCQLLDI GKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GTGYWKATGT DKVITTEGRK 120 VGIKKALVFY VGKAPKGTKT NWIMHEYRLI EASRKNGSSK LDDWVLCRIY KKNSSAQKPL 180 SSVASKEHSN NGSSSSSSSQ LDDMLESFPE LDDRYFGLPR MNSLKTLQND AKTGFHNLGS 240 GNLDWASLAG LNSVPELVPS GQTQTQSQGI PGYGNNDVYV PTMQPTLCQM DTSTNKIGNS 300 VDEEVQSGLR TQRADNSGFF QQNSSVLTQN FSNSMDPYGF RYPTHPGGFG FRQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-67 | 72 | 178 | 65 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-67 | 72 | 178 | 65 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-67 | 72 | 178 | 65 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-67 | 72 | 178 | 65 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-67 | 72 | 178 | 68 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-67 | 72 | 178 | 68 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-67 | 72 | 178 | 68 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-67 | 72 | 178 | 68 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-67 | 72 | 178 | 68 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-67 | 72 | 178 | 68 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-67 | 72 | 178 | 68 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-67 | 72 | 178 | 68 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-67 | 72 | 178 | 65 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-67 | 72 | 178 | 65 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007021328.2 | 0.0 | PREDICTED: NAC domain-containing protein 72 | ||||
Swissprot | A0A3Q7HH64 | 1e-108 | JA2L_SOLLC; NAC domain-containing protein JA2L | ||||
TrEMBL | A0A061F666 | 0.0 | A0A061F666_THECC; NAC domain transcriptional regulator superfamily protein isoform 2 | ||||
STRING | EOY12855 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1435 | 27 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.3 | 7e-99 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG031364t2 |
Entrez Gene | 18593865 |
Publications ? help Back to Top | |||
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