PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG031311t3
Common NameTCM_031311
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 366aa    MW: 40520.5 Da    PI: 8.7601
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG031311t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.14.3e-15258356196
                       EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                       f k+lt sd+ ++ grlvlpk++ae++  +++ ++++ ++++d +g  We++++y  + ++++yvl+ G k++  + + + gD+v+ + ++++
  Thecc1EG031311t3 258 FSKTLTASDAEARnGRLVLPKRCAEAYfpDISAQQGIFVVVQDIKGDDWEFYYRYwlNTNGKMYVLE-GLKDYIISEQWQPGDTVTVY-KREE 348
                       8899****9988769**************8888899*******************877777779999.********************.4449 PP

                       EE..EEEE CS
                B3  89 efelvvkv 96 
                       +++l++++
  Thecc1EG031311t3 349 DGKLFMGL 356
                       99888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-22251360IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.01E-15255353IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-18256358No hitNo description
PfamPF023624.4E-12258356IPR003340B3 DNA binding domain
SMARTSM010191.0E-10258359IPR003340B3 DNA binding domain
PROSITE profilePS508639.925259360IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAVSPCFAVA VVIASGEMQL LWLQMTKRHR FCSAFSSTAY TFLLWKLWHS AYLKGTFCDT  60
FHPEASGWRD CASCRKRIHC GCIMASSTYT ILDFGGVKCA ECAVNEALAP HRCTPSFWSP  120
QAIQHAMDSA KRLSIDPEKA ITVGMKSDSC VHVAGIKAGI NPIASPDSVV CNVSPNKIAT  180
ATIPGAAFQA QFPLSETGEE SSVNSPHGTN NSCQKKVGKR RKNVYRKTRV QSRYSPQTSL  240
EELKEICRVS KSSLVPLFSK TLTASDAEAR NGRLVLPKRC AEAYFPDISA QQGIFVVVQD  300
IKGDDWEFYY RYWLNTNGKM YVLEGLKDYI ISEQWQPGDT VTVYKREEDG KLFMGLKKVQ  360
AGKSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A5e-352353581123B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017980526.10.0PREDICTED: B3 domain-containing transcription repressor VAL2
RefseqXP_017980527.10.0PREDICTED: B3 domain-containing transcription repressor VAL2
RefseqXP_017980528.10.0PREDICTED: B3 domain-containing transcription repressor VAL2
TrEMBLA0A061FE850.0A0A061FE85_THECC; HSI2-like 1 isoform 1
STRINGEOY127890.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.12e-51HSI2-like 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]