PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG031294t1
Common NameTCM_031294
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 368aa    MW: 41263.3 Da    PI: 8.4624
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG031294t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.43.8e-192673148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd++l+d+++++G g+W+t ++  g++R++k+c++rw +yl
  Thecc1EG031294t1 26 KGPWTAEEDQKLIDYIQKHGHGRWRTLPKNAGLRRCGKSCRLRWTNYL 73
                      79********************************************97 PP
2Myb_DNA-binding51.91.8e-1679123147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  Thecc1EG031294t1  79 RGKFSIEEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 123
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-261776IPR009057Homeodomain-like
PROSITE profilePS5129419.8492173IPR017930Myb domain
SuperFamilySSF466891.24E-3123120IPR009057Homeodomain-like
SMARTSM007176.1E-162575IPR001005SANT/Myb domain
PfamPF002495.0E-172673IPR001005SANT/Myb domain
CDDcd001674.91E-132873No hitNo description
PROSITE profilePS5129426.70274128IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-2777128IPR009057Homeodomain-like
SMARTSM007171.2E-1478126IPR001005SANT/Myb domain
PfamPF002492.8E-1579123IPR001005SANT/Myb domain
CDDcd001675.36E-1181124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MQWVMRVSLS LAMAKPPCCD KNGLKKGPWT AEEDQKLIDY IQKHGHGRWR TLPKNAGLRR  60
CGKSCRLRWT NYLRPDIKRG KFSIEEEETI IQLHSVLGNK WSAIAARLPG RTDNEIKNYW  120
NTHIKKKLLR MGIDPVTHSP RLDLLELSSL LSSSLYNSSQ LNPAGLLGIG PMFNRNFLNF  180
AAALLSSQNK TLEISPENIQ QNQTGNFQCQ NQYETYQANQ VQNPMQGYTT SQANLNHLST  240
NPNNNLSCQM SLPNLWPEYD RENVSISTPK GFFPMQNYGY HDSINQSITN SLAENRSCFS  300
DQNNIPNLSP FGSLLSTPSS SSTPLNSPST TYANNNGSST EDIERDSYCS NMLMFDVPNG  360
LNVNGCV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-32241285108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017980529.10.0PREDICTED: transcription repressor MYB6
SwissprotQ9LDR81e-102MY102_ARATH; Transcription factor MYB102
TrEMBLA0A061F6V20.0A0A061F6V2_THECC; MYB-like 102, putative
STRINGEOY127660.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2234145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.12e-85MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  5. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]