PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG031289t1

Common Name

TCM_031289

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NZZ/SPL

Protein Properties

Length: 324aa MW: 34340.8 Da PI: 9.4002

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG031289t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	86.3	7.4e-27	32	321	40	314
NOZZLE 40 kksrgrkpgsktaqqkqkkptlrgmgvaklerfiieeekkklvvatvgd....tssvaaisntatrlpvpvdrgvvlqgfps........... 117 k +grkp k qk k rgmgva+ler +++e+ kk++ at t+ + + +t + pv +gv g p Thecc1EG031289t1 32 KSNKGRKPTGKGPYQK--KQPQRGMGVAQLERLRLQEKWKKMTEATTTTittpTTQFPSDPIGTTNI--PVLHGVANYGVPMminggnggllg 120 5679****988764..4457****************6665543111123334444455555..599*****999999999888 PP NOZZLE 118 .....slgssril.cggvg..sgqvmidp.....vispwgfvetsatthelssisnpqmynassnnrcdtcfkkkrldgdqnnvvrsngggfs 197 l +r + gg g gqv++ v g ve+s elss+++ q +rcd cfkkkr +gd+ vr ng gf Thecc1EG031289t1 121 wgdtaGLVMQRAVgNGGFGglNGQVLVGApgsvqVACGAGVVEASK---ELSSMPKLQHC---KPDRCDVCFKKKRCNGDN---VRFNG-GFN 203 8876634345544156666345888885323333667789999988...9987754...5678**********9...9996.699 PP NOZZLE 198 kytmipppmngydeyllqs.dhhqrsqgfl..ydqriaraasvsaasasinpyfneatnltgsreefgsvlegnprngsrgv.keyeffpgky 286 ++ i p d++l + +++q + + + r ar+a+ a +ne+ + gs g++ v eyeffpgk Thecc1EG031289t1 204 QFGQILPN--KGDHFLGWNqENNQNINEEIngFSARAARSAAAYAGHMN----INETVEVVAI-HRKGSS------MGTGSVlMEYEFFPGKS 283 99998653..334544322022333222221145677777744444444....4555554443.334444......25555428********9 PP NOZZLE 287 dervskv.....akvaslvg.dcspn....tidlslkl 314 +s a+++ +vg + s +dlslkl Thecc1EG031289t1 284 SRSTSSKewelpAEASVAVGgEASYAnasnCVDLSLKL 321 87665422222245566665244421244499999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	1.7E-28	32	321	IPR014855	Plant transcription factor NOZZLE

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048653	Biological Process	anther development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MATSLTLLTP NTNNPTAKAL EDEARPAVGF VKSNKGRKPT GKGPYQKKQP QRGMGVAQLE 60 RLRLQEKWKK MTEATTTTIT TPTTQFPSDP IGTTNIPVLH GVANYGVPMM INGGNGGLLG 120 WGDTAGLVMQ RAVGNGGFGG LNGQVLVGAP GSVQVACGAG VVEASKELSS MPKLQHCKPD 180 RCDVCFKKKR CNGDNVRFNG GFNQFGQILP NKGDHFLGWN QENNQNINEE INGFSARAAR 240 SAAAYAGHMN INETVEVVAI HRKGSSMGTG SVLMEYEFFP GKSSRSTSSK EWELPAEASV 300 AVGGEASYAN ASNCVDLSLK LSY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007021230.2	0.0	PREDICTED: protein SPOROCYTELESS
TrEMBL	A0A061F5Z4	0.0	A0A061F5Z4_THECC; Uncharacterized protein
STRING	EOY12755	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18639	6	7

Link Out ? help Back to Top
Phytozome	Thecc1EG031289t1
Entrez Gene	18593798

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]