PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thecc1EG031172t1 | ||||||||
Common Name | TCM_031172 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
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Family | bHLH | ||||||||
Protein Properties | Length: 460aa MW: 49832 Da PI: 6.6099 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.7 | 6.6e-06 | 350 | 388 | 11 | 54 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Thecc1EG031172t1 350 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 388 5778999**********998.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 12.519 | 339 | 388 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.17E-7 | 349 | 393 | No hit | No description |
SuperFamily | SSF47459 | 1.05E-11 | 349 | 405 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0037 | 350 | 394 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-9 | 353 | 396 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 460 aa Download sequence Send to blast |
MADEFNTGTN WWDSSRTNTR FDAAGSSSSS SGLNNSLGSF GWATEMVDIK AARSSMDSVS 60 SVSGSSVVFQ DAPKLQGVPD HPPPGDLHMM GLGLSSQAMD WNQALLRGDK SESSFRSMLQ 120 DNLNSSANYQ QETAGMGSSQ VQWRDKMFSG VGGDASVNEF KQISRGFSLD QSQFSPHGSS 180 SDSTVTCQGL PSSFQMDSTA LYGSPSTILQ GLLGSENQAQ QSSYENRSIN YQYGAAAASY 240 GMNTNELLPS WSKVPQFLRS SPPKQHLHGQ LHFSNNAPFW NPSAAASMTD VRPGFFPSLQ 300 TQFPTGNFDE KPKNISEGRD SSTVVKKSGN EPASKRPRNE TPTPLPAFKV RKEKMGDRIT 360 ALQQLVSPFG KTDTASVLSE AIEYIKFLHE QVSVLSTPYM KSGAAIQHQQ SSEKSKDPEG 420 PKQDLRSRGL CLVPVSSTFP VTHESTVDFW TPTFGGTFR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007021136.2 | 0.0 | PREDICTED: transcription factor bHLH123 isoform X2 | ||||
Swissprot | Q8GXT3 | 1e-100 | BH123_ARATH; Transcription factor bHLH123 | ||||
TrEMBL | A0A061F6M7 | 0.0 | A0A061F6M7_THECC; Basic helix-loop-helix DNA-binding superfamily protein | ||||
STRING | EOY12661 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4024 | 25 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20640.1 | 1e-100 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Thecc1EG031172t1 |
Entrez Gene | 18593721 |
Publications ? help Back to Top | |||
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